Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8 347 1e-90 seq3 176 5e-39 seq10 145 9e-30 seq4 113 5e-20 >seq8 Length=1110981 Score = 347 bits (384), Expect = 1e-90 Identities = 949/1435 (66%), Gaps = 70/1435 (5%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || || || ||| | || | ||| | |||||| |||||||| |||| Sbjct 323825 AACTCGCCGGCAAGAACACGGCGCTGGTAAATGTTGGAAGTGTAGGGCTCAAAGCACTCG 323884 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || |||||||| | ||| || || || ||||| || | |||| || || || Sbjct 323885 TTGTTACCCAGGATCTGCGACGTACTGGCAGTGGGCATGGGTGCAACCAGGAGAGAGTTG 323944 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA----C 80531 || | ||||||| ||| || | ||| ||| || || ||||| | Sbjct 323945 CGGACACCGTGCTGCTTAATCTTCTCCT-------TGAGGGAAGTCCAGTCCCAAAGATC 323997 Query 80532 GCTGTG------ACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGC 80585 |||| | | |||||||||| |||| |||||||| ||| |||| || ||| | Sbjct 323998 GCTGGGCGTCACATCCCACATGTCAAATTGCAGGATGCCCTGCGAGACCGGCGAGCCCTC 324057 Query 80586 GAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTG 80645 | || ||| | |||||| |||| ||| | ||| || || | || || ||||| Sbjct 324058 ATAAGTAGAGTATGTGCCCTCAGTCTGGGCAATCTCCATTGAGGCCGTCAGCGCAGCGTG 324117 Query 80646 ATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAA 80705 || ||| |||||| | |||||||| || |||| || || || | || Sbjct 324118 GTAGATGGTCTCAAAAATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAAGGCAT 324177 Query 80706 GCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCG 80765 || || || ||| | |||||||| ||||| || |||| | |||||||||||||| Sbjct 324178 GCGCAGAGCCAGGAAGGCATCAGCCAGACCCTGGACACCGACACCAATCGGGCGGTGGCG 324237 Query 80766 CTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCA 80824 | |||| | | | | |||||||| | ||||| ||| ||| |||| |||||||| Sbjct 324238 CATGTTGCTGTTG-TAGGCCTCCGTGACAGGGTAGTGGTTCACATCAATGATGCGGTTCA 324296 Query 80825 GGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT 80884 ||||||| ||| ||| |||| || |||||||| || ||||||| | | | ||| | Sbjct 324297 GGTTGCGGACAACGACCTGTGTGACTTCATGAAGCTTTCCAAAGTCGTACTCG--CCCTT 324354 Query 80885 -------TC-ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 || ||||||| || ||| || || ||||| |||||||| || ||||| || Sbjct 324355 GTTGTAGTCAACAAATGAGGGCAGGGCAAGAGAGGCCAGGTTGCACACAGCAACCTCATC 324414 Query 80937 ---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAG 80993 ||| | || |||||| || || ||||||| || || ||| |||||||| Sbjct 324415 GGGGGCA-CAGT--ACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACCCAG 324471 Query 80994 GTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGT 81053 ||| |||||||| |||| |||||| ||||||||| ||| | || | || || Sbjct 324472 GTTCTTCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTGTAAAGCATAAAGGGATTGCCAGT 324531 Query 81054 CTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAA 81113 |||| ||| | || || ||||||| ||| | || | || |||| ||| ||||| Sbjct 324532 CTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGAGCTTTGATAACCATGCGGCC 324591 Query 81114 TTTGCCTTCGGCCACATACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGT-GAAGTT 81169 |||||| | ||||| |||| |||| || |||| | |||| | || | Sbjct 324592 ACGGCCTTCCTTTTCGTACTTTTCGTACAGAGCT---TCAAACTCATCGCCGTAGCAG-T 324647 Query 81170 CAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAG 81229 ||| ||| | ||||||||||| ||||||||||| |||||| || ||||| ||| Sbjct 324648 CAGCCAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCCTCGTTCTTCTCAACAC 324707 Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 ||||||||| ||| |||||| || || ||||| ||||||| || |||| | Sbjct 324708 GCTTCATGAACAGGTCGCAGATCCACAGAGCCAGGAACAAGTCGCGGGCACGAACCTCTT 324767 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | || ||||| ||||| || || || || | | ||| || ||||| || |||| Sbjct 324768 CCTTTCCATGGTTCTTGCGCAGGTCAAGGAACTCAAACACGTCGGCGTGCCAGGGTTCCA 324827 Query 81350 GATACACGGCGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTC 81405 | || | || | | | || || | ||||||||||| || || ||||| || Sbjct 324828 GGTATATAGC-AAAGGCACCGGGCCGCTTGTTGCCACCCTGGTCAACATAGCGGGCCGTG 324886 Query 81406 GCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATA 81465 ||| || |||||||||||||| | ||||| | || |||||| || || | || Sbjct 324887 TTGTTGAAGACACGCAACATAGGAACAATACCGTTGGAGGTACCGTTGGTGCCGGCAATG 324946 Query 81466 CGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTG 81523 || || |||| || | | || ||| ||||||||||| || | | ||| | Sbjct 324947 TAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGACCGATGCCGCCAGCCATCTTGG 325004 Query 81524 AAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGT 81583 | ||| |||||| || | ||| || ||||| ||||| ||||| || | ||||||| Sbjct 325005 AGATCATAGCACAAGTCTTGAGGGTATCGTAAATGCCCTCAATGCTGTCGTCCTTCATGT 325064 Query 81584 C-------AAGCAAGAA-ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAG 81635 | ||||| ||| |||||| | | ||||||| | ||||| ||||| || Sbjct 325065 CGACTAGAAAGCATGAAGACAGCTGGGC--CTGAGGG------GTACCGGCGTTGAAGAG 325116 Query 81636 TGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACATCAGGTCATAGGTTTCCTTGACGC 81694 || || | ||| || | ||| ||| | | ||||| |||| || || || || | Sbjct 325117 AGTGGGAGACGCATGGGT-AAAGAACTTGCTCGACATGAGGTTGTAAGTCTCGAGAACAC 325175 Query 81695 GTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 | | || |||||| ||| |||| || |||||||||| ||||| |||||| Sbjct 325176 GCTCCACATTGTCACCCCAAATGCCGACGGCAACACGCATAATCATGTGCTGGGG 325230 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || ||||| ||||| || | || Sbjct 479100 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGATC 479041 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| || Sbjct 479040 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 478981 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 478980 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAG 478921 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || || ||||||| || ||||| Sbjct 478920 GAGTCCACCCTCCACCTGGTTCTGCGTCTGCGTGGTGG 478883 >seq3 Length=3916844 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| || ||||| || || ||||| Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || ||||||| |||||||| | ||||| || Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||| ||||| ||| | ||||| |||||||| Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGG 1905209 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 1905138 GTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTGAC 1905079 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || || ||||||||||| || || || |||||||||||||| ||| Sbjct 1905078 AACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATT 1905019 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| ||||| || ||||||| ||| || || ||||||| || |||| |||||| Sbjct 1905018 TTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAGGAA 1904959 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || ||||| ||||| || ||||||| || || || || Sbjct 1904958 TCTACTCTGCATCTGGTTCTGCGTCTGCGTGGAGGCCA 1904921 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| || | || | || | ||| | ||| | Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| ||||||||||| || || |||||||| ||| Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| |||||||| | ||||| || |||| || || |||||||| ||| Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAT 1905460 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 1905459 CTCGTCCTCCGTCTCCGTGGTGG 1905437 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGC 32060 || |||||||| || ||||||||| ||| || ||| || || || ||||||||||||| Sbjct 3035670 CAACGCAAGGTCATTTACGCCTGCTTCAGCAAAAACGTGGTCCAG-GACATGAAGGTGGT 3035612 Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120 || || | || ||||| | | || || |||| || ||||| |||| ||| || || Sbjct 3035611 TGAGTTGGCTGGTTACGTTTCTGGACATACCTCCTACCAACACGGTGAGGTGTCTCTGCA 3035552 Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 | || ||| | ||| ||||||| |||||| ||| | ||||| | |||| | || Sbjct 3035551 GCAAACAATTATTGGCCTGGCTCAGACCTTTGTGGGTTCTAATAATGTCAACTGCTTGGA 3035492 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 || ||| | ||||| | || || | |||||| |||||||| | | ||||| Sbjct 3035491 ACCCAGTGGTAACTTTGGTTCGCGTCTTTCTGGTGGCTCTGATGCTGCTTCCGCTCGTTA 3035432 Query 32241 CATCTTCACCCGTCTCGCACCTT 32263 ||| ||||| || | |||| Sbjct 3035431 TATCCATACCCGCCTGTCCCCTT 3035409 >seq10 Length=988720 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 887336 ATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 887277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 887276 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 887217 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| || ||||| | || ||||| | ||||| || Sbjct 887216 CAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGTCTGACTACAAC 887157 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 887156 ATCCAGAAGG 887147 >seq4 Length=2525909 Score = 113 bits (124), Expect = 5e-20 Identities = 260/384 (68%), Gaps = 11/384 (3%) Strand=Plus/Plus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGTCTC 64722 ||||| || |||||| || |||||| | | || |||| | |||| ||||| || Sbjct 2286836 AAGGCCGACTGGGCCCTCAAGTGGATCACCGACAAGGAGTCGACCTTTGCCCAGCGCCTG 2286895 Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782 | || |||||| || || || || ||||| || || | ||| || || |||||| Sbjct 2286896 GTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCGCTTTCGCCTCCATCTTCTGG 2286955 Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842 || ||||| ||||| ||||| || ||| | || || |||||||||||||| || ||| Sbjct 2286956 CTGCGCAAGCGCGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTGATCTCGCGTGAC 2287015 Query 64843 GAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCA 64902 ||||| || ||| || ||||| | |||||| |||||||| || || || Sbjct 2287016 GAGGGCCTGCACACCGACTTTGCCTGTCTGCTGTTCTCGCACCTCAACAACCGCCC--CA 2287073 Query 64903 -CATGGGACTATAATTGA-TATAGTAAAATCG--GCTGTAGAAATTGAAAAGGAATTCAT 64958 || | | || | || | | | | || ||||| | ||||| ||||| ||| | Sbjct 2287074 GCAAGCAGC--TAGTCGAGCAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCT 2287131 Query 64959 TACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATAT 65018 || | || || || ||| | ||| |||||||| | ||||| ||||| ||||| || Sbjct 2287132 GACCGAGGCCCTGCCCTGTGGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACAT 2287191 Query 65019 CGAATTTGTAGCAGATCGCCTGCT 65042 || || || || || |||||||| Sbjct 2287192 TGAGTTCGTCGCCGACCGCCTGCT 2287215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310314453440