Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 >seq3 Length=3916844 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| | || ||||| ||||| || | ||| Sbjct 1905435 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCC 1905376 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || || || || Sbjct 1905375 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1905316 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || | ||| ||||||| |||||| Sbjct 1905315 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAAC 1905256 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | ||| | || | ||| |||| ||||| || Sbjct 1905255 ATTCAAAAGGAGTCCACTCTGCATCTCGTCCTCCGTCTGCGCGGTGGTAT 1905206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || ||||| |||||| | |||||| |||| || | ||||| Sbjct 1905641 TGACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGT 1905582 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || ||||| || || || || ||||| | || | || || | Sbjct 1905581 CCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAA 1905522 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || | ||| ||||||| |||||||| || || ||||| || | | Sbjct 1905521 AGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGC 1905462 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | ||| | || ||||| || Sbjct 1905461 ATCTCGTCCTCCGTCTCCGTGGTGGTAT 1905434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918334762240