Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 >seq2 Length=3936381 Score = 93.3 bits (102), Expect = 4e-14 Identities = 330/512 (64%), Gaps = 43/512 (8%) Strand=Plus/Plus Query 6550 GATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAA 6609 |||||||| ||||| | ||| || || |||| |||| ||| |||||||||| Sbjct 849907 GATGTGGTCAAGGTACACATGTGCGTCGCCCATAACATGCGTCAGGCTTCCAGGAACCAG 849966 Query 6610 CCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC 6669 || || |||| ||||||| || ||||||| ||| ||||||||||| || || Sbjct 849967 GCCTGTTGCACGAGCAATCATGTGTGTAAGCAGAGAGTACGAGGCAATGTTGAAGGGTAC 850026 Query 6670 CCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACA------------GCT- 6716 || | |||||||| | ||| ||||| |||| ||||||| || ||| Sbjct 850027 ACCCAGGCCCATGTCGCACGACCGTTGGTAGAACTGGCAGTGCAAATGGCCTTTGGGCTT 850086 Query 6717 --------CCCCATTCGCG------------ACGTAGAATTGGCAGAGGGTGTGGCACGG 6756 || | || ||| |||||||| ||| | | || ||||| Sbjct 850087 TTCCTCGCCCTCCTTTGCGCCGGGATATGAAACGTAGAACTGGGCAAACATATGACACGG 850146 Query 6757 GGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTC 6816 || || |||||| || || ||||||||||||| ||| | || | | || Sbjct 850147 CGGCAGGGCCATCTTCTTTAGGTCTGCGGGGTTCCACGCGCTCATTATAATGCGCCGATC 850206 Query 6817 ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCG 6875 | || || ||| | ||| ||| || | | || |||||||| | || | |||| Sbjct 850207 GTACGGATTGGTCTTGAGCTTGTGGATGACCT-CGGCTAGCTGGTCGACACCTTTGCCCG 850265 Query 6876 AATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAG 6934 ||||||| || || | || ||||| || ||||| || | ||| ||||| ||||| Sbjct 850266 TGTAGTCCGTTTTGGCGTCTACG-TACTCGGCGCCAAAATGGCGCCATTGGAAGCCGTAC 850324 Query 6935 ACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG--GA-ACCCCCGCTTGTCCAGAAAGTCT 6991 || ||||||| ||| || ||| || | ||| || ||| ||| |||| ||||| || Sbjct 850325 ACGGGGCCCAGGTCTCCGACCT--CGCGGTGGCCGAGGCCCACGC-TGTCGAGAAACTCC 850381 Query 6992 CGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || |||| | ||||||||||| || || Sbjct 850382 CGCGAGCCGTTGCCATCCCAGATCTTGACGCC 850413 Score = 93.3 bits (102), Expect = 4e-14 Identities = 330/512 (64%), Gaps = 43/512 (8%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TC-- 34378 || || ||||||||||| | |||| || || || ||||| |||| ||| ||| || Sbjct 850413 GGCGTCAAGATCTGGGATGGCAACGGCTCGCGGGAGTTTCTCGACA-GCGTGGGCCTCGG 850355 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | || ||| || ||| ||||||| || ||||| ||||| ||| | || ||||| Sbjct 850354 CCACCGCG--AGGTCGGAGACCTGGGCCCCGTGTACGGCTTCCAATGGCGCCATTTTGGC 850297 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGT 34496 || ||||| || | || || ||||||| |||| | || | |||||||| || | Sbjct 850296 GCCGAGTA-CGTAGACGCCAAAACGGACTACACGGGCAAAGGTGTCGACCAGCTAGCCG- 850239 Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 | || ||| ||| | ||| || || | || | | || | ||| ||||||||| Sbjct 850238 AGGTCATCCACAAGCTCAAGACCAATCCGTACGATCGGCGCATTATAATGAGCGCGTGGA 850179 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 |||| || || |||||| || || ||||| || | | ||| ||||||| Sbjct 850178 ACCCCGCAGACCTAAAGAAGATGGCCCTGCCGCCGTGTCATATGTTTGCCCAGTTCTACG 850119 Query 34617 T------------CGCGAATGGGG---------AGC------------TGTCCTGCCAGC 34643 | ||| || | || ||| || ||||||| Sbjct 850118 TTTCATATCCCGGCGCAAAGGAGGGCGAGGAAAAGCCCAAAGGCCATTTGCACTGCCAGT 850059 Query 34644 TCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTC 34703 |||| ||||| ||| | |||||||| | || || || ||||||||||| ||| ||| Sbjct 850058 TCTACCAACGGTCGTGCGACATGGGCCTGGGTGTACCCTTCAACATTGCCTCGTACTCTC 849999 Query 34704 TGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGT 34763 |||| || ||||||| |||| || || |||||||||| ||| |||| Sbjct 849998 TGCTTACACACATGATTGCTCGTGCAACAGGCCTGGTTCCTGGAAGCCTGACGCATGTTA 849939 Query 34764 TGGGGGATGCGCATATCTACCTGAACCACATC 34795 |||| || || ||| | ||||| |||||||| Sbjct 849938 TGGGCGACGCACATGTGTACCTTGACCACATC 849907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262332760640