Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 >seq3 Length=3916844 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| ||||| || || || |||| ||| || || | || |||||||| Sbjct 1905232 ATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 1905291 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 1905292 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1905351 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | ||| ||| ||||| || || | ||||| | ||||| | Sbjct 1905352 GGACTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTTCCAG 1905410 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || ||||||||||| Sbjct 1905411 TCAGGGTCTTGACGAAGATTTGCAT 1905435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545537178956