Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 113 1e-19 seq10 105 2e-17 >seq3 Length=3916844 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || || ||||| ||||| || |||| ||||| || | | ||| Sbjct 1904929 ACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGT 1904988 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || ||||| || || || || Sbjct 1904989 GCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCC 1905048 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| || || ||||| || |||| || || || | Sbjct 1905049 CTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGACTTCGAG 1905108 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 || || ||||| || |||| Sbjct 1905109 AGTTATGGTCTTTCCAGTCA 1905128 >seq10 Length=988720 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| ||||||||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| || ||||| ||| ||| ||| Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| |||| || || || | || |||||||| ||||| | || || | ||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 225706 ACTTGCATTTT 225716 | ||||| || Sbjct 887329 ATCTGCATCTT 887339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531016648328