Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 3e-15
>seq2
Length=3936381
Score = 96.9 bits (106), Expect = 3e-15
Identities = 286/444 (64%), Gaps = 49/444 (11%)
Strand=Plus/Plus
Query 27221 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 27280
|||| ||||||| || || |||||||| ||| ||||| |||||||| || || ||||
Sbjct 849978 GAGCAATCATGTGTGTAAGCAGAGAGTACGAGGCAATGTTGAAGGGTACACCCAGGCCCA 850037
Query 27281 TGTCCCCCGACCTCTGGTAGAGCTGACA---CGA---------GAGCTCTCCATCGC--- 27325
|||| | ||||| ||||||| ||| || | | | ||| | | ||||
Sbjct 850038 TGTCGCACGACCGTTGGTAGAACTGGCAGTGCAAATGGCCTTTGGGCTTTTCCTCGCCCT 850097
Query 27326 ---TT---------------ACGTAAAACTG-----ACATATGGCGTGGCACGGAGGAAG 27362
|| ||||| ||||| ||||||| | |||| || ||
Sbjct 850098 CCTTTGCGCCGGGATATGAAACGTAGAACTGGGCAAACATATGAC-----ACGGCGGCAG 850152
Query 27363 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422
||||| | |||| ||||||||| |||| || || ||||||| || | ||
Sbjct 850153 GGCCATCTTCTTTAGGTCTGCGGGGTTCCACGCGCTCATTATAATGCGCCGATCGTACGG 850212
Query 27423 GTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479
||| || ||| || || || || | ||||| || || || | |||| |||
Sbjct 850213 ATTGGTCTTGAGCTTGTGGATGACCTCGGCT---AGCTGGTCGACACCTTTGCCCGTGTA 850269
Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539
||| | ||| |||||| || || ||||| | ||||||||| |||||||| ||
Sbjct 850270 GTCCGTTTTGGCGTCTACGTACTCGGCGCCAAAATGGCGCCATTGGAAGCCGTACACGGG 850329
Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599
||||||||||| | || | ||| ||| |||| |||| | ||| || | || ||
Sbjct 850330 GCCCAGGTCTCCGACCTCGCGGTGGCCGAGGCCCACGCTGTCGAGAAACTCCCGCGAGCC 850389
Query 27600 GTTGGCGTCCCAGATCTTTACCCC 27623
|||| | ||||||||||| || ||
Sbjct 850390 GTTGCCATCCCAGATCTTGACGCC 850413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507145959572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |