Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 116 9e-21 seq8 87.8 4e-12 seq10 84.2 5e-11 >seq3 Length=3916844 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||| ||||| ||||| |||||||| |||| | || | ||||| Sbjct 1905223 GAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 1905282 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| || | ||||||||||| | ||| || ||||| Sbjct 1905283 CTCAAGCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 1905340 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| | || | |||| ||| ||| ||||| ||||| || Sbjct 1905341 TCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATG 1905400 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||||| ||||| Sbjct 1905401 GTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 107 bits (118), Expect = 4e-18 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| ||||| |||||||| ||||||||||| |||| | || | Sbjct 1905445 GAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACG 1905504 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || | ||||||||||| | ||| || Sbjct 1905505 GCCATCCTCAAGCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCC 1905562 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| | || | |||| ||| | || || ||||| Sbjct 1905563 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCACCTCAAGG 1905622 Query 152064 GTAATAGTTTTGCCCGT 152080 || || || ||||| || Sbjct 1905623 GTGATGGTCTTGCCGGT 1905639 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| |||||||| || || ||||||||||| || | | ||| | ||||| Sbjct 1904939 AGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCATCC 1904998 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | ||||||||||| | ||| || ||||| ||| Sbjct 1904999 TCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 1905058 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | | || || ||| ||||| ||||| || || Sbjct 1905059 TGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGACTTCGAGAGTTATGGTC 1905118 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 || || || || ||||| |||| Sbjct 1905119 TTTCCAGTCAGGGTCTTGACGA 1905140 >seq8 Length=1110981 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 478898 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 478957 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||||| | || || ||||| || Sbjct 478958 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 479017 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || || ||||| || Sbjct 479018 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCTAGGGTAATGGTC 479077 Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095 || ||||| || ||||| ||||| Sbjct 479078 TTACCCGTCAGGGTCTTGACGAA 479100 >seq10 Length=988720 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || || |||||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | || || ||||| || ||||| || |||||| | || Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 152097 ACCTGCATTTT 152107 | |||||| || Sbjct 887329 ATCTGCATCTT 887339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820622600052