Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 181 2e-40 seq8 179 8e-40 seq10 156 9e-33 seq4 105 1e-17 >seq3 Length=3916844 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || || ||||| | ||| || ||||| ||||||||||| | Sbjct 1905208 ACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 1905267 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || |||||||||| || || ||||| || Sbjct 1905268 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 1905327 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| ||||| Sbjct 1905328 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 1905387 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 1905388 TTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| ||||| |||||||||||||| | Sbjct 1905436 ACCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1905495 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || |||||||||| || || ||||| || Sbjct 1905496 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1905555 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| |||| ||| || Sbjct 1905556 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCAC 1905615 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 1905616 CTCAAGGGTGATGGTCTTGCCGGTCA 1905641 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||||||| | || ||| || |||||||||||||| | Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || || || || | ||| || ||||| || Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | || ||| | || || || || || | |||||| Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGACT 1905103 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||||||| || ||||| || |||| ||||| |||| Sbjct 1905104 TCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGACGA 1905140 Score = 84.2 bits (92), Expect = 5e-11 Identities = 197/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACA- 274489 |||||||| |||||||||| | | | |||| ||||| | | || ||||| Sbjct 3036098 ACGATGGGGGTGATAAATTCCCTGAAGAAATTGGGAATCTTCAAAAGGGAAGGGAACTGC 3036157 Query 274490 ACTATGGAAAAAGTTCATGACAAGACCT--GATATGTGAGTTCCGTCAACGTCGGCATCT 274547 ||| || |||||||| |||| ||||||| ||||||||| || || || ||| Sbjct 3036158 ACT-TGCAAAAAGTTGATGAGAAGACCTTTGATATGTGAA--CCATCGTGATCCTGATCA 3036214 Query 274548 GTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT- 274606 | ||||||||| | ||| ||||| || || ||||| | || | || | ||| Sbjct 3036215 GCCATGATCATCAGATGGCCATAGCGGAGACTCTTGGTATCGGTGTATA-CTGTCTTGTG 3036273 Query 274607 -TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCA 274665 || || |||| ||| |||||||| | ||| || | ||||| ||||| ||| Sbjct 3036274 CTTCAACCCCA-GAAATTGCTTGATATTTTGGATCTCCTGATTCTTGGTGATTTGATCCA 3036332 Query 274666 CAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCC 274714 || ||||| ||||||||||||| |||||| || ||||| || || || Sbjct 3036333 GTGACGCATCGCGTACGTTCAGCATCTTACCACGAAGAGGAAATACACC 3036381 >seq8 Length=1110981 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | ||| || || |||||||||||||| | Sbjct 478882 ACCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 478941 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 478942 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 479001 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 479002 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 479061 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || || ||||||||||||| ||||| ||||| Sbjct 479062 CTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100 >seq10 Length=988720 Score = 156 bits (172), Expect = 9e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| || |||||||| ||||| || || || || || |||||| Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| || ||||| | || || | ||| Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||||||||| | || || ||||| || |||||||||||||| | ||||| ||||| Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328 Query 283092 ATCTGCATTTTCATATACA 283110 |||||||| || | |||| Sbjct 887329 ATCTGCATCTTGACCTACA 887347 >seq4 Length=2525909 Score = 105 bits (116), Expect = 1e-17 Identities = 174/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 230160 CAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGC 230219 || ||| |||| || | || | | ||| ||||||||| | ||| || | || || Sbjct 2287091 CAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGGCCCTGCCCTGT 2287150 Query 230220 CGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGT 230279 | || |||||||||| || || |||||| ||| || || || ||||| || || || Sbjct 2287151 GGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGC 2287210 Query 230280 ATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATG 230339 | |||| || || || |||| || || || | ||| |||||||| | |||||| Sbjct 2287211 CTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCGCCACCAACCCCTTTGACTTTATG 2287270 Query 230340 GAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAA 230399 ||| ||| || ||| || || || ||||||||||| ||||| || |||| || ||| Sbjct 2287271 GAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGACTACCAA 2287330 Query 230400 AGGCCCGGTGT 230410 | | |||| || Sbjct 2287331 AAGGCCGGCGT 2287341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739039063848