Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 181 2e-40
seq8 179 8e-40
seq10 156 9e-33
seq4 105 1e-17
>seq3
Length=3916844
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| ||||| || || || ||||| | ||| || ||||| ||||||||||| |
Sbjct 1905208 ACCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 1905267
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || |||||||||| || || ||||| ||
Sbjct 1905268 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 1905327
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| |||||
Sbjct 1905328 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 1905387
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||||||||| ||||| || |||| ||||| ||||| || |||||
Sbjct 1905388 TTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || ||||| | ||| ||||| |||||||||||||| |
Sbjct 1905436 ACCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 1905495
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || |||||||||| || || ||||| ||
Sbjct 1905496 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1905555
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| |||| ||| ||
Sbjct 1905556 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAAGTTTCCAC 1905615
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || ||||| ||||| || ||||
Sbjct 1905616 CTCAAGGGTGATGGTCTTGCCGGTCA 1905641
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||| || || |||||||| | || ||| || |||||||||||||| |
Sbjct 1904924 CCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAG 1904983
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| |||||||| || || || || || || || | ||| || ||||| ||
Sbjct 1904984 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 1905043
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| | || ||| | || || || || || | ||||||
Sbjct 1905044 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCAGAGGACTCGACT 1905103
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|||||||| || ||||| || |||| ||||| ||||
Sbjct 1905104 TCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGACGA 1905140
Score = 84.2 bits (92), Expect = 5e-11
Identities = 197/289 (68%), Gaps = 10/289 (3%)
Strand=Plus/Plus
Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACA- 274489
|||||||| |||||||||| | | | |||| ||||| | | || |||||
Sbjct 3036098 ACGATGGGGGTGATAAATTCCCTGAAGAAATTGGGAATCTTCAAAAGGGAAGGGAACTGC 3036157
Query 274490 ACTATGGAAAAAGTTCATGACAAGACCT--GATATGTGAGTTCCGTCAACGTCGGCATCT 274547
||| || |||||||| |||| ||||||| ||||||||| || || || |||
Sbjct 3036158 ACT-TGCAAAAAGTTGATGAGAAGACCTTTGATATGTGAA--CCATCGTGATCCTGATCA 3036214
Query 274548 GTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT- 274606
| ||||||||| | ||| ||||| || || ||||| | || | || | |||
Sbjct 3036215 GCCATGATCATCAGATGGCCATAGCGGAGACTCTTGGTATCGGTGTATA-CTGTCTTGTG 3036273
Query 274607 -TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCA 274665
|| || |||| ||| |||||||| | ||| || | ||||| ||||| |||
Sbjct 3036274 CTTCAACCCCA-GAAATTGCTTGATATTTTGGATCTCCTGATTCTTGGTGATTTGATCCA 3036332
Query 274666 CAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCC 274714
|| ||||| ||||||||||||| |||||| || ||||| || || ||
Sbjct 3036333 GTGACGCATCGCGTACGTTCAGCATCTTACCACGAAGAGGAAATACACC 3036381
>seq8
Length=1110981
Score = 179 bits (198), Expect = 8e-40
Identities = 171/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || ||||| || | ||| || || |||||||||||||| |
Sbjct 478882 ACCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 478941
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||||| || || ||||| ||
Sbjct 478942 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 479001
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| |||||
Sbjct 479002 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 479061
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || ||||||||||||| ||||| |||||
Sbjct 479062 CTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100
>seq10
Length=988720
Score = 156 bits (172), Expect = 9e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| || |||||||| ||||| || || || || || ||||||
Sbjct 887149 TTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGATC 887208
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| || ||||| | || || | |||
Sbjct 887209 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 887268
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||||||||||| | || || ||||| || |||||||||||||| | ||||| |||||
Sbjct 887269 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 887328
Query 283092 ATCTGCATTTTCATATACA 283110
|||||||| || | ||||
Sbjct 887329 ATCTGCATCTTGACCTACA 887347
>seq4
Length=2525909
Score = 105 bits (116), Expect = 1e-17
Identities = 174/251 (69%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 230160 CAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGC 230219
|| ||| |||| || | || | | ||| ||||||||| | ||| || | || ||
Sbjct 2287091 CAGATCATCACCGATGCTGTCGTCATTGAGAAGGAGTTCCTGACCGAGGCCCTGCCCTGT 2287150
Query 230220 CGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGT 230279
| || |||||||||| || || |||||| ||| || || || ||||| || || ||
Sbjct 2287151 GGCCTCCTCGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGC 2287210
Query 230280 ATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATG 230339
| |||| || || || |||| || || || | ||| |||||||| | ||||||
Sbjct 2287211 CTGCTCGTCGCCCTCGGAAACGAAAAGGTCTACCGCGCCACCAACCCCTTTGACTTTATG 2287270
Query 230340 GAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAA 230399
||| ||| || ||| || || || ||||||||||| ||||| || |||| || |||
Sbjct 2287271 GAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGACTACCAA 2287330
Query 230400 AGGCCCGGTGT 230410
| | |||| ||
Sbjct 2287331 AAGGCCGGCGT 2287341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739039063848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |