Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq10 116 3e-21
seq8 114 9e-21
seq3 111 1e-19
>seq10
Length=988720
Score = 116 bits (128), Expect = 3e-21
Identities = 142/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| || | || ||| |||| ||||||||||| || || ||||
Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 887266
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||||||||| ||||| |||||||| ||
Sbjct 887267 --CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 887324
Query 44326 GAAGATTTGCAT 44337
||| || |||||
Sbjct 887325 GAAAATCTGCAT 887336
>seq8
Length=1110981
Score = 114 bits (126), Expect = 9e-21
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | || |||||||| || ||| |||||| ||||||||||| |||
Sbjct 478880 ATACCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 478939
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| || ||| | || || |||||||| || |||||||||| |||||||| || |
Sbjct 478940 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGG 478999
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | || ||||| ||| ||||| ||| | | | || ||||| | || ||
Sbjct 479000 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 479059
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328
||||| | ||||| ||||| ||||| |||||||| |||||
Sbjct 479060 ACCTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 479100
>seq3
Length=3916844
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| ||||||||| |||||||| |||| || || | || ||
Sbjct 1905227 ACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 1905286
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| || | || | || ||||| |||
Sbjct 1905287 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 1905346
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||||| || || || || | || || ||||||
Sbjct 1905347 ATCTTGGACTTGACGTTGTCGATCGTGTCGGAAGACTCGACTTCGAGAGTGATGGTCTTT 1905406
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| ||||||||||||||
Sbjct 1905407 CCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/187 (71%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| ||| || ||||||||||| |||| || || | || ||
Sbjct 1905455 ACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 1905514
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| || | ||| | || ||||| |||
Sbjct 1905515 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 1905574
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||||| | ||||||||| | || || ||||
Sbjct 1905575 ATCTTGGACTTGACATTGT--CGATCGTGTCGGAAGTTTCCACCTCAAGGGTGATGGTCT 1905632
Query 44307 TTCCCGT 44313
| || ||
Sbjct 1905633 TGCCGGT 1905639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990347351404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |