Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 154 4e-32 seq10 127 5e-24 seq8 122 2e-22 >seq3 Length=3916844 Score = 154 bits (170), Expect = 4e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| |||||||||| || ||||| ||||| || ||||| Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||||||||||||||| || || ||||| || ||||| Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || ||| |||| || ||| |||| ||||| || || |||||| Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAT 1905460 Query 178125 CTTGT 178129 || || Sbjct 1905459 CTCGT 1905455 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||| ||||| || || || ||| Sbjct 1905432 CAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCCGAC 1905373 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 1905372 ACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 1905313 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | || ||| |||| || ||| | Sbjct 1905312 CGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATT 1905253 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || |||||||| || Sbjct 1905252 CAAAAGGAGTCCACTCTGCATCTCGT 1905227 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| || || || ||||| || || ||| || ||||| | Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| || ||||| || || ||||| ||||||||||| || || | Sbjct 1905080 ACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCA 1905021 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || ||||| || ||||| | ||||| | || || ||| |||| || | Sbjct 1905020 TTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAGG 1904961 Query 178111 AATCAACACTGCATCTTGTTTTG 178133 |||| || |||||||| ||| || Sbjct 1904960 AATCTACTCTGCATCTGGTTCTG 1904938 >seq10 Length=988720 Score = 127 bits (140), Expect = 5e-24 Identities = 148/199 (74%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 887344 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 887288 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||| ||||| || ||||| |||||||||||||| || || || | Sbjct 887287 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 887228 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||||||||| || || |||||||| || || ||||| || || || | || || Sbjct 887227 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGT 887168 Query 178090 CCGATTATAACGTCCAAAA 178108 | || || ||| |||| || Sbjct 887167 CTGACTACAACATCCAGAA 887149 >seq8 Length=1110981 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || || ||||| ||||| || || ||||| || Sbjct 479101 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGAT 479042 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 479041 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| || ||||| | || || |||| || ||| |||| || Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922 Query 178109 AGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || ||| || Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTG 478897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731014926328