Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 4e-32
seq10 127 5e-24
seq8 122 2e-22
>seq3
Length=3916844
Score = 154 bits (170), Expect = 4e-32
Identities = 145/185 (78%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||| |||||||||| || ||||| ||||| || |||||
Sbjct 1905639 ACCGGCAAGACCATCACCCTTGAGGTGGAAACTTCCGACACGATCGACAATGTCAAGTCC 1905580
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||||||||||||||| || || ||||| || |||||
Sbjct 1905579 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCTGGAAAG 1905520
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || ||| |||| || ||| |||| ||||| || || ||||||
Sbjct 1905519 CAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATCCAGAAAGAGTCCACTCTGCAT 1905460
Query 178125 CTTGT 178129
|| ||
Sbjct 1905459 CTCGT 1905455
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || ||||| || ||||| ||||| || || || |||
Sbjct 1905432 CAAATCTTCGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAAGTCGAGTCTTCCGAC 1905373
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 1905372 ACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 1905313
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| ||||| || ||||| | || ||| |||| || ||| |
Sbjct 1905312 CGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATT 1905253
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| || || || |||||||| ||
Sbjct 1905252 CAAAAGGAGTCCACTCTGCATCTCGT 1905227
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || ||||| || || || ||||| || || ||| || ||||| |
Sbjct 1905140 TCGTCAAGACCCTGACTGGAAAGACCATAACTCTCGAAGTCGAGTCCTCTGATACCATTG 1905081
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| || ||||| || || ||||| ||||||||||| || || |
Sbjct 1905080 ACAACGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCA 1905021
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| ||||| || || ||||| || ||||| | ||||| | || || ||| |||| || |
Sbjct 1905020 TTTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTCTCAGACTACAACATCCAGAAGG 1904961
Query 178111 AATCAACACTGCATCTTGTTTTG 178133
|||| || |||||||| ||| ||
Sbjct 1904960 AATCTACTCTGCATCTGGTTCTG 1904938
>seq10
Length=988720
Score = 127 bits (140), Expect = 5e-24
Identities = 148/199 (74%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 887344 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 887288
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||| ||||| || ||||| |||||||||||||| || || || |
Sbjct 887287 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 887228
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
| ||||||||||| || || |||||||| || || ||||| || || || | || ||
Sbjct 887227 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGCACCCTGT 887168
Query 178090 CCGATTATAACGTCCAAAA 178108
| || || ||| |||| ||
Sbjct 887167 CTGACTACAACATCCAGAA 887149
>seq8
Length=1110981
Score = 122 bits (134), Expect = 2e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 479101 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCGGACACGAT 479042
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || || ||||||||||| || ||
Sbjct 479041 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 478982
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | || || |||| || ||| |||| ||
Sbjct 478981 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 478922
Query 178109 AGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || || ||| ||
Sbjct 478921 GGAGTCCACCCTCCACCTGGTTCTG 478897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731014926328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |