Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016-
03-01] 12 sequences; 23,333,049 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq10 152 5e-32
seq8 150 2e-31
seq3 143 2e-29
seq7 82.4 7e-11
>seq10
Length=988720
Score = 152 bits (168), Expect = 5e-32
Identities = 154/196 (79%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||| || |||||||| |||| || |||||||| || ||||| |
Sbjct 887147 CCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGCTTACCAGCGAAGA 887206
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACG 41789
|||||||||| ||||||| ||||| || |||||||||| ||| | || | ||| || |
Sbjct 887207 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 887265
Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
|| | |||||| ||||| ||||| | || ||||| |||||||| || ||||| |
Sbjct 887266 TCG--ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGA 887323
Query 41850 CGAAAATCTGCATGTT 41865
||||||||||||| ||
Sbjct 887324 CGAAAATCTGCATCTT 887339
>seq8
Length=1110981
Score = 150 bits (166), Expect = 2e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 478883 CCACCACGCAGACGCAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 478942
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| || || ||||||||||| ||||||| ||||
Sbjct 478943 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 479002
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 479003 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATCGTGTCCGAAGACTCGAC 479061
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
||| | || || || ||||||||||| ||||| ||||||
Sbjct 479062 CTCTAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 479101
>seq3
Length=3916844
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || |||||||| ||| |||||| |||||||| ||||||||
Sbjct 1905209 CCACCGCGCAGACGGAGGACGAGATGCAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 1905268
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| || || || ||||||||||| ||||||| |||
Sbjct 1905269 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 1905328
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | |||||| ||||| ||
Sbjct 1905329 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATCGTGTCGGAAGACTCGAC 1905387
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || || ||||| ||||| ||||| || |||||
Sbjct 1905388 TTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 1905435
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||||||||| || |||||||| ||||| ||||| ||
Sbjct 1904923 GCCTCCACGCAGACGCAGAACCAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCTGA 1904982
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || ||||||||||| ||||| || || ||||| ||||||| |||
Sbjct 1904983 GAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 1905042
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| ||| | | | || || ||||| |
Sbjct 1905043 GATGCCCTCCTTGTCTTGGATCTTGGACTT-GACGTTGTCAATGGTATCAGAGGACTCGA 1905101
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
| || | ||||| || || || ||||| ||||| ||||
Sbjct 1905102 CTTCGAGAGTTATGGTCTTTCCAGTCAGGGTCTTGACGA 1905140
Score = 109 bits (120), Expect = 5e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| ||| ||| ||||| ||||| ||||||||
Sbjct 1905437 CCACCACGGAGACGGAGGACGAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAA 1905496
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| || || || ||||||||||| ||||||| ||
Sbjct 1905497 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 1905556
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 1905557 ATGCCCTCCTTGTCCTGGATCTT 1905579
>seq7
Length=1169112
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| ||||| || || |||||||| ||| ||||||| |||||| ||||| || |||
Sbjct 395956 CGCATCGCTCCCCGCTCCGGCCTTGCCGCCAAGCACTTCATCGACACCGGCGCTGGTGTC 395897
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907
|||||||||||||||||||| | |||| | | || |||||||||
Sbjct 395896 ATCGACGCCGACTACCGCGGCGAAGTCAAGGTGCTCCTGTTCAACCAC 395849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303930654400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |