Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3478 187 3e-42 seq1214 149 6e-31 seq373 140 3e-28 seq2574 132 5e-26 seq6049 109 6e-19 >seq3478 Length=17986 Score = 187 bits (206), Expect = 3e-42 Identities = 319/457 (70%), Gaps = 7/457 (2%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||| | |||||| | | | ||| | ||| || |||||| Sbjct 8207 AGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGTGAGTCTACCTACGCTCAGCGCC 8266 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || || || || ||||| || | ||||| ||| |||||| |||| || | Sbjct 8267 TTGTTGCATTTGCTGCTGTCGAAGGTATTTTCTTCAGTGGCGCTTTCGCTTCCATCTTCT 8326 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || || ||||| |||||||| ||| |||||| |||||||| | | Sbjct 8327 GGCTGAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAACTCATCTCTCGTG 8386 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||||||||| ||||| ||||| ||||||||| || || | || || | Sbjct 8387 ACGAGGGTCTGCACACTGACTTCGCCTGCTTGCTGTTCTCACACCTGAACAACCGCCCCA 8446 Query 117222 GCGCGGCGCGCGTCAGGGAG--ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279 || | |||||| || || ||| | ||||| || || ||||| ||| || ||||| Sbjct 8447 GCAAGCAGCGCGT--GGAAGCCATCATTACCGATGCTGTTGCCATTGAGAAGGAGTTCCT 8504 Query 117280 CACCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338 ||||| || || || |||| ||||| || | ||| | | |||| ||| |||| Sbjct 8505 GACCGAGGCCTTGCCCTGTGC-CCTGCTCGGCATGAATGCCAACTTGATGAAGCAGTACA 8563 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 |||| |||||||||||| | || || ||| || | | || ||| |||||| | Sbjct 8564 TCGAATTCGTCGCCGACCGTCTCCTCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTA 8623 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| | ||||| ||| | ||||| |||||| Sbjct 8624 CTAACCCTTTCGACTTCATGGAGAACATCTCCCTTGG 8660 Score = 150 bits (166), Expect = 2e-31 Identities = 188/257 (73%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||||||||| |||||||||| |||||| | |||||| Sbjct 7801 ATTTGGCAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCTGAGGAGATTGACCTG 7860 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| | ||||||| | || |||| ||| ||||| | |||||| Sbjct 7861 TCTAAGGACCTGCACGACTGGAACAACCGTTTGACCGATGACGAGAAATACTTCATCTCC 7920 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || ||||| ||||||||||| ||||| || || ||||||| Sbjct 7921 CACATCCTCGCCTTCTTTGCCGCTTCGGACGGCATCGTTAACGAAAACTTGATCGAGCGC 7980 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||| | | ||||| || || ||||||||||| |||| | ||| Sbjct 7981 TTCAGTGCTGAGGTCCAGATTCCTGAGGCCCGTTGTTTCTACGGCTTCCAGACCATGATG 8040 Query 116873 GAGAACGTGCACTCGGA 116889 |||||| | ||||| || Sbjct 8041 GAGAACATCCACTCCGA 8057 >seq1214 Length=170273 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 100887 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 100828 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| || ||| | ||||| Sbjct 100827 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 100768 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 100767 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 100708 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || ||||| || | || || Sbjct 100707 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 100661 >seq373 Length=59380 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| |||| || ||| | | Sbjct 42 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 101 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 102 GATACGATCGACAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 160 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||||||| |||||||| |||| || || || |||||||| Sbjct 161 GCAGCGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAA 220 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || ||||| | ||| |||| Sbjct 221 CATCCAGAAGGAGTCGACACTGCACTTGGTGCTGCG 256 >seq2574 Length=14985 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| || Sbjct 193 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 134 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| ||||| ||||| ||||| Sbjct 133 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGAC 74 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| ||||| ||||| || || | ||||||||| ||||||| Sbjct 73 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 14 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 13 AACATCCAGAAGG 1 >seq6049 Length=106314 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| || |||||| | || || || | |||||| | | Sbjct 70330 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 70271 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| |||||| || || | ||||| ||||| ||||| |||| || || ||| | Sbjct 70270 GACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATT 70212 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | ||||| || |||||||||||||||||| Sbjct 70211 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 70152 Query 40878 GG 40879 || Sbjct 70151 GG 70150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515177885860400