Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq373 113 4e-20 seq638 107 2e-18 seq2574 100 2e-16 seq1214 95.1 1e-14 seq6049 84.2 2e-11 >seq373 Length=59380 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | ||| ||||| || || |||||||| || || || || || Sbjct 254 CAGCACCAAGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCAGACAGCGTCCGGCCGTC 195 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 194 TTCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 135 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||| || || || | |||| || |||| || | || ||||||| ||| | || Sbjct 134 TTGAATCTTGGCCTTCACGTTGTCGATCGTATCCGATGAT-TCCACCTCGAGGGTGATCG 76 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| ||||| || || || || || ||||| Sbjct 75 TCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 42 >seq638 Length=259535 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283 ||||| ||||| |||||||| ||||| ||||| | |||| | || || || | || Sbjct 7566 TTGACAACTTGGAACTCGCCAGCGAGCACGCGGCGCTGATAGATGTTGGATGTATAGGGC 7507 Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 || || | ||||||||||| || ||||||| |||| || ||||||||| ||||| | Sbjct 7506 TCAAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTCGAGGCAGTGGGCATGGGCGCCATC 7447 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 ||||| ||| | || |||| || || || ||| || ||| ||| ||||||||| Sbjct 7446 AACAAGCTGTTGCGGACACCGTGCTGCTTGATCTTGGCCTTCAAGGCGTCCCAGTCCCAG 7387 Query 133404 AGAT 133407 |||| Sbjct 7386 AGAT 7383 >seq2574 Length=14985 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || |||||| | || Sbjct 3 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATC 62 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || ||||| || ||||||||||| || || || || | ||| Sbjct 63 AGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 122 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | | ||||||||| | || | || ||||| || || || || || || Sbjct 123 ATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG 182 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 183 ATCTGCAT 190 >seq1214 Length=170273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | || || |||||| Sbjct 100679 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 100738 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || ||||| || || || || || ||||||||||| Sbjct 100739 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGG 100798 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 100799 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 100858 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 100859 CCCGTGAGGGTCTTGACGAAGATCTGCATG 100888 >seq6049 Length=106314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | |||||| |||||| ||||| || || ||| |||| Sbjct 70152 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 70211 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||| ||||| ||||| || ||||||||||| || || || || | ||| Sbjct 70212 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 70271 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | ||| ||||| | ||| | || ||||| ||||| || || || || Sbjct 70272 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 70330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433796481919180