Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq638 158 2e-33 seq3478 113 6e-20 >seq638 Length=259535 Score = 158 bits (174), Expect = 2e-33 Identities = 394/593 (66%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||||| | ||| || || | | | ||| || ||||| Sbjct 6720 CCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTCATG 6661 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| || || | || || || | | | ||| || ||||| Sbjct 6660 AAGAGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 6601 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | ||||| ||||| || |||| ||| ||| Sbjct 6600 TGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATG 6541 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || || || || |||||||| | ||||| || ||||| || | Sbjct 6540 GCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAG 6481 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | |||||| || || || |||||||| | || ||||| || | ||| ||| || Sbjct 6480 ACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCG 6421 Query 72274 CTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || | | |||| |||| || || || ||||| || ||||| | | Sbjct 6420 GTGGCACGGATGCGGTGGACGTTGA--GACCAATGCCTCCAGCCATCTTGGAGATCATGG 6363 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | ||||||||||||||||| || || || ||| |||||| || || | Sbjct 6362 CACAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGA 6303 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| || || || || ||||| || | || || || ||||| | Sbjct 6302 AGCACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTG 6243 Query 72452 TAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATAT----CCCA 72506 | || | || | |||| |||| ||||| ||||||| | | || || | ||| Sbjct 6242 TGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCC 6184 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 |||| || || ||||||||||| | ||| ||||| || | || |||| Sbjct 6183 CAGATG----CCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 6135 >seq3478 Length=17986 Score = 113 bits (124), Expect = 6e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| || ||||| || |||||||||||| || | | || | ||||||||| Sbjct 8423 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 8364 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || |||||||| || ||||| || || || || || | ||| Sbjct 8363 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 8304 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCA 42232 ||||| || ||||| || || ||||| |||| ||| | || | || | || Sbjct 8303 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 8244 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| || |||||| | ||||||| ||||||||||| Sbjct 8243 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 8206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671085383025400