Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq638 154 2e-32 seq3478 116 5e-21 >seq638 Length=259535 Score = 154 bits (170), Expect = 2e-32 Identities = 395/596 (66%), Gaps = 14/596 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||||| | ||| || |||| | || || || ||| Sbjct 6723 AGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTC 6664 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| || || | || || || | | | || || ||| Sbjct 6663 ATGAAGAGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTT 6604 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || ||||||||| | | | ||||| ||||| || |||| ||| Sbjct 6603 CCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAG 6544 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || || || || |||||||| | ||||| || ||||| || Sbjct 6543 ATGGCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTG 6484 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | |||||| || || || |||||||| || || ||||| || | ||| ||| Sbjct 6483 AAGACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAG 6424 Query 63320 CCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | |||| |||| || || || ||||| || ||||| | Sbjct 6423 CCGGTGGCACGGATGCGGTGGACGTTGA--GACCAATGCCTCCAGCCATCTTGGAGATCA 6366 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || || | ||||||||||||||||| || || || ||| |||||| || | Sbjct 6365 TGGCACAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGA 6306 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || |||| || || || || ||||| || | || || || |||| Sbjct 6305 GGAAGCACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGT 6246 Query 63498 GAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT----C 63552 | || || | || | || | |||| ||||| ||||||| | | || || | | Sbjct 6245 GTGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCC 6187 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 || |||| || || ||||||||||| | ||||||||| || | || |||| Sbjct 6186 CCCCAGATG----CCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 6135 >seq3478 Length=17986 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| ||| || ||||| || ||| ||||||||||| | | || | ||||||||| Sbjct 8423 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 8364 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || |||||||| || ||||| || ||||| || || | ||| Sbjct 8363 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 8304 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 32828 |||||||| ||||| || || ||||| |||| ||| | || | || | | Sbjct 8303 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 8244 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 | ||| || |||||| | ||||||| ||||||||||| Sbjct 8243 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 8206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633581190634000