Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3478 125 1e-23 seq4397 100 6e-16 seq596 98.7 2e-15 >seq3478 Length=17986 Score = 125 bits (138), Expect = 1e-23 Identities = 293/432 (68%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | || ||||| ||||||||||||||| ||||| || Sbjct 8681 TCGAAGAAGTTGGTCTTCCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTAGTA 8622 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || |||| || ||||| || || || || | Sbjct 8621 GACTTGTAGATCTTCTCGTTGCCGAGAGCGACGAGGAGACGGTCGGCGACGAATTCGATG 8562 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||| | | |||||||| | || ||| || | ||||| | | Sbjct 8561 TACTGCTTCATCAAGTTGGCATTCATGCCGAGCAGGGCACAGGGCAAGGCCTCGGTCAGG 8502 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG-TGC---CAGAGA 251798 || ||||| || ||||||| || || | || || | ||| | ||| | | | Sbjct 8501 AACTCCTTCTCAATGGCAACAGCATCGGTAATGATGGCTTCCACGCGCTGCTTGCTGGGG 8442 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAA-CTGTTGGTGCAGACCCTCG 251856 | | |||||| || | |||| |||| | || || || | || ||||||||||||| Sbjct 8441 CGG-TTGTTC---AGGTGTGAGAACAGCAAGCAGGCGAAGTCAGT--GTGCAGACCCTCG 8388 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| ||||| |||||||| | |||||||||||||| ||||| ||| | ||| Sbjct 8387 TCACGAGAGATGAGTTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGC 8328 Query 251917 CAGAAGATTGC-GCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||||||| | || |||| ||| ||| | | ||| |||||| | ||||||| Sbjct 8327 CAGAAGATGGAAGCGAAAGCG-CCACTGAAGAAAATACCTTCGACAGCAGCAAATGCAAC 8269 Query 251976 AAGGCGCTCAGC 251987 |||||||| ||| Sbjct 8268 AAGGCGCTGAGC 8257 >seq4397 Length=44488 Score = 100 bits (110), Expect = 6e-16 Identities = 430/671 (64%), Gaps = 13/671 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || ||||||||||||||||| || ||| |||||||||| || | Sbjct 7511 AGTCGGCTCTCTGTCTGGCGGTTGGAAGATGAAGCTCGCTCTCGCTCGCGCCATGCTGCA 7570 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | ||||||||||| || || || || || || |||||| |||| | ||| | || Sbjct 7571 GAAGGCCGATGTCCTCCTCCTGGACGAACCGACTAACCACTTGGATGTTGCGAACATTGC 7630 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 |||| | | |||||| | | | | | | | || || || |||||||| Sbjct 7631 CTGGTTGGAAAACTACCTCAAGACGCACCCGGACATCACCAGTCTTATCGTTTCTCACGA 7690 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 |||||||||||| || || | | | |||| ||||| || | |||||| Sbjct 7691 CTCTGGCTTCCTCGACAATGTCACCACGGACATCTACCACTACGAACCTGGCAAGAAGCT 7750 Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAG--CGCCCTGAGGCGGCCGCC 279992 | | | || ||||||||| |||||||||| ||| | ||||| || || | Sbjct 7751 CGGCCACTTCAAGGGCAACCTGGCTGCTTTCGT--CAATGTTCGCCCCGAAGCTAAGAGC 7808 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || | | || | | ||| | ||||| || ||| | ||| Sbjct 7809 TACTACACGCTCTCTGCCAGCAATGTCCAGTTCAAGTTCCCACCTCCCGGGATCCTGTCT 7868 Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 ||| ||| || || | || |||| | | || ||| ||| | || | Sbjct 7869 GGCGTCAAGTCGAACACACAAGCCGTCATTCGTATGTC--GAATGTCAGCTTCTCATACC 7926 Query 280111 CCAATGGCCCCAA--CATCTTCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCACGGA 280167 | |||| ||||| | || | | | |||| || || | | ||| || || Sbjct 7927 CGAATGCACCCAAGCCCTCGTTGTCGGATGTCTCCTGCAAGCTGACGATGTCGTCTCGCG 7986 Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 | | | ||||||| ||||| ||||| || ||||| || || ||||| | || || |||| Sbjct 7987 TGGCTATCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTCATCAAGCTGCTCACCGGCG 8046 Query 280228 AGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTC 280286 ||| ||| ||| | || | | | |||||| ||||| |||| || | ||| || Sbjct 8047 AGA-CCATCCCAAGTACCGGAAAGGTCGAGAAGCACCCCAATCTGCGTATCGGATACATC 8105 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| | | ||| |||||| |||||||| | ||| || ||||| ||| | Sbjct 8106 AAGCAGCACGCCCTGGAACACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTG 8165 Query 280347 CAGTGGCGCTA 280357 ||||||||||| Sbjct 8166 CAGTGGCGCTA 8176 >seq596 Length=232321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 434/676 (64%), Gaps = 47/676 (7%) Strand=Plus/Minus Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG- 279759 ||| ||||| ||||||||||||||||||||||| || || ||| | || || | Sbjct 207098 TTCCCTGTCCGGTGGTTGGAAGATGAAGCTGGCTCTGTGCCGTGCCGT----CTTCGAGA 207043 Query 279760 ---CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCT 279816 ||||| | || ||||| || ||||| ||||||||| |||| || ||||| |||| Sbjct 207042 ACCCCGATATTCTGCTGCTGGACGAGCCCACCAACCACTTGGATGTCAAGAACGTGGCCT 206983 Query 279817 GGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 |||| | | |||||| | | | | | ||| | ||| |||| ||||||||||||| Sbjct 206982 GGCTCGAGGACTACCTCAAGA-ACAGCA-CATG-CACGTCCATCATGGTCTCTCACGACT 206926 Query 279877 CTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCT 279936 |||| ||||| | ||||||| |||| | |||| |||| | |||||| Sbjct 206925 CTGGTTTCCTGAACCGCGTGTGCCAGTACATCGTCAACTACGAGC---GCTTCAAGCTCA 206869 Query 279937 CCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACT 279996 | | ||| ||||||||| | |||||| || ||| | || | |||| Sbjct 206868 AGACGTACAAGGGCAACCTGGAGGACTTCGTGAGGCAGAACCCCGCTGCCAAGTCGTACT 206809 Query 279997 ATGACCTGAAGGACGCCACCGCCA---AGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 || || || ||| ||| | ||| ||||||||||| || || || || | Sbjct 206808 TCGAGCT---GGGCGCATCCGAGATGGAGTTCTCCTTCCCTGAGCCTGGTTTCCTCGATG 206752 Query 280054 GCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGC------GTCTCCTTTGCTT 280107 | ||| | |||| || ||| || |||| | | ||| | Sbjct 206751 GTGTCAAGACCAAGGCCAAGGCCATC------CTGCGTGCCAACAAGATGGGCTTCCAGT 206698 Query 280108 ATCCCAATGGCCCCAA-CATC----TTCAG-CAGTGTCAACTCGCAGGTTTCTATGAACT 280161 | ||||| |||||| | || ||| | || ||| || ||| || || || Sbjct 206697 ACCCCAACACCCCCAAGCCTCAGATTTCGGACA---TCACCTTCCAGTGCTCCCTGGGCT 206641 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| ||||| || ||||| ||||| || || |||||||| |||| || || Sbjct 206640 CCCGTATTGCCGTCATCGGTCCCAACGGTGCCGGCAAATCTACCCTGGTCAACGTTCTCT 206581 Query 280222 CTGGCGA---GACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGG 280278 || || || || |||| ||||| | ||| ||| ||||| || || | Sbjct 206580 GCGGTGAGCTGATCC---CCACCGAGGGTGAGATCTGGTCGCACGAGAACATCCGTATTG 206524 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || ||||||||||| ||||||||| ||||||||||||| ||| ||| Sbjct 206523 CGTACATCAAGCAGCACGCTTTTGCCCACATCGATAACCACCTGGACAAGACGCCTTCGG 206464 Query 280339 AATACATTCAGTGGCG 280354 | |||||||| ||||| Sbjct 206463 AGTACATTCAATGGCG 206448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027752319845015