Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1214 145 8e-30 seq3478 141 9e-29 seq373 138 1e-27 seq2574 123 2e-23 seq6049 96.9 3e-15 >seq1214 Length=170273 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 100887 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 100828 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | |||||| Sbjct 100827 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 100768 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 100767 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 100708 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| ||||| Sbjct 100707 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 100673 >seq3478 Length=17986 Score = 141 bits (156), Expect = 9e-29 Identities = 331/486 (68%), Gaps = 20/486 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAA-ATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || ||| |||||| | ||| | ||| || || || ||||| Sbjct 8684 TTCTCGAAGAAGTTGGTCTT-CCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTT 8626 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 | | |||||| ||| | |||||| || ||||||| || | |||||| ||||| Sbjct 8625 AGTAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CGACGAGGAGACGGTCGGCGACGAA 8569 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799 |||||||| ||| ||| | | ||| | || ||||| |||| || || || | Sbjct 8568 TTCGATGTACTGCTTCATCAAGTTGGCATTCATGCCGAGCAGG-GCACAGGGCAAGGCCT 8510 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT---TTCCCTAACGCGCG 132856 |||| || || | ||| ||||| || || ||||| | ||| |||| |||||| Sbjct 8509 CGGTCAGGAACTCCTTCTCAATGGCAACAGCATCGGTAATGATGGCTTCC---ACGCGCT 8453 Query 132857 CCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 | ||| || || | || || ||||| |||||| || ||||| |||| | Sbjct 8452 GCTTGCTGGGGCGGTTGTTCAGGTGTGAGAACAGCAAGCAGGCGAAGTCAGTGTGCAGAC 8393 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | || |||||||||||| ||| |||| ||| ||||| || || || || | Sbjct 8392 CCTCGTCACGAGAGATGAGTTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCT 8333 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| |||||| ||| ||||| | || ||||| || || || | Sbjct 8332 TCAGCCAGAAGATGGAAGCGAAAGCGCCACTGAAGAAAATACCTTCGACAGCAGCAAATG 8273 Query 133037 CCACCAGGCGCTCGCCGAACGT-GGCT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTC 133094 | || ||||||| || | || | || | | ||| |||||| | ||| ||||| || Sbjct 8272 CAACAAGGCGCTGAGCGTAGGTAGACTCACGGTCCTG--GATCCACCTCAGAGCCCAGTC 8215 Query 133095 GGCCTT 133100 |||||| Sbjct 8214 GGCCTT 8209 Score = 131 bits (144), Expect = 2e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| | | || |||||||| || || || ||||| | | Sbjct 8057 TCGGAGTGGATGTTCTCCATCATGGTCTGGAAGCCGTAGAAACAACGGGCCTCAGGAATC 7998 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || || | ||| ||||||| || |||||||| ||||||||||| ||||| Sbjct 7997 TGGACCTCAGCACTGAAGCGCTCGATCAAGTTTTCGTTAACGATGCCGTCCGAAGCGGCA 7938 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAG 133371 || ||||| || | ||| |||||| | ||||| ||| |||| || | |||| Sbjct 7937 AAGAAGGCGAGGATGTGGGAGATGAAGTATTTCTCGTCATCGGTCAAACGGTTGTTCCAG 7878 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 ||| || |||||| |||||||| | |||||| ||||||| || ||||||||| || Sbjct 7877 TCGTGCAGGTCCTTAGACAGGTCAATCTCCTCAGCGGTCCAGAAGGACGCCTCGTGCTTC 7818 Query 133432 TTGTACAT 133439 |||||||| Sbjct 7817 TTGTACAT 7810 >seq373 Length=59380 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| |||| || || | | Sbjct 42 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 101 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || || | ||||| ||||| |||||| | ||||| Sbjct 102 GATACGATCGACAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 160 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| |||||||| |||| || || || |||||||| Sbjct 161 GCAGCGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAA 220 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| |||||||||||| || | || || Sbjct 221 CATCCAGAAGGAGTCGACACTGCACTTGGTGCTGCGTCTGCGTGGTGG 268 >seq2574 Length=14985 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| || Sbjct 193 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCC 134 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || || | ||| Sbjct 133 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGAC 74 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| ||| ||||| ||||| || || | ||||||||| ||||||| Sbjct 73 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 14 Query 38421 AACATCCAAAAGG 38433 |||||||| |||| Sbjct 13 AACATCCAGAAGG 1 >seq6049 Length=106314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| | || || ||| | |||||| | | Sbjct 70330 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 70271 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || | || |||| ||||| ||||| || || | || |||||||| | Sbjct 70270 GACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATT 70212 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | ||||| || ||||||||||||||| || Sbjct 70211 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 70152 Query 38432 GG 38433 || Sbjct 70151 GG 70150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500132692393600