Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2112 156 3e-33 >seq2112 Length=5501 Score = 156 bits (172), Expect = 3e-33 Identities = 223/313 (71%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||| ||||| | ||||| |||||||| || || ||||||| || ||| || Sbjct 3941 CACGTAGAACTGCGCAAACATG---TGGCACGGCGGCAGCGCCATGATCTTCAGGTCCTT 3885 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||||||||| |||| || |||||| || | ||| | ||||| ||| | || ||| Sbjct 3884 GGGGTTCCACGCGCTCAGGATGATCCGGCGGTCGTGCGGGTTCGTCCGCAGCTTGTGCAC 3825 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 | | | |||||| || || ||| || | |||||| || | | ||| |||||| Sbjct 3824 GACCTCCGCCAGCTGGTCGACGCCCTGGCCGGCGTAGTCCGCGCGCGCGTCGACGTACTC 3765 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 || ||||| |||| |||||||||||||||||| || || ||||| ||||| || | ||| Sbjct 3764 GGCGCCGAAGTGCCGCCACTGGAACCCGTACACGGGGCCGAGGTCGCCCTCCTCGCGGTG 3705 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 | | | |||| |||||| || | | || |||||| ||||||||||||| || || Sbjct 3704 CGCCAGGCCCACGCTGTCCAGGAACGCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 3645 Query 30285 CTTCTCGGAGAGC 30297 || | || |||| Sbjct 3644 CTGCGCGCTGAGC 3632 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||||| ||| ||||| ||| |||| |||||||| |||| ||||||||| ||||| Sbjct 4234 GGCTCCCGCTCCAGCTGCGTCCGGAGCGCGTCCACGTGGTCCACGTAGACGTGCGCGTCG 4175 Query 29839 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| | ||| | || || ||||| | || || ||||| || | ||||| ||| Sbjct 4174 CCCATGACGTGCGTCAGGCTG-CCCGGGACGAGGTCGCACACGTGCGCGACCATGTGCGT 4116 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 || || | ||||||||||||||| || || || ||||| |||||||| | |||| ||| Sbjct 4115 CAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCGCAGGACCGCTG 4056 Query 29958 GTAGAGCTGACA 29969 ||| ||||| || Sbjct 4055 GTACAGCTGGCA 4044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408585653126795