Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2112 127 2e-24 >seq2112 Length=5501 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||||| ||| ||||| ||| |||| ||||||||||| | ||||||||| || || Sbjct 4234 GGCTCCCGCTCCAGCTGCGTCCGGAGCGCGTCCACGTGGTCCACGTAGACGTGCGCGTCG 4175 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| | ||| | || || ||||| | || || ||||| || | ||||| ||| Sbjct 4174 CCCATGACGTGCGTCAGGCTG-CCCGGGACGAGGTCGCACACGTGCGCGACCATGTGCGT 4116 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802 || || | ||||||||||||||| || ||||| ||||| |||||||| | |||| ||| Sbjct 4115 CAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCGCAGGACCGCTG 4056 Query 29803 GTAGAGCTGGCA 29814 ||| |||||||| Sbjct 4055 GTACAGCTGGCA 4044 Score = 105 bits (116), Expect = 5e-18 Identities = 207/313 (66%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889 |||||| ||||| | ||||| |||||||| || || ||||||| || ||| || Sbjct 3941 CACGTAGAACTGCGCAAACATG---TGGCACGGCGGCAGCGCCATGATCTTCAGGTCCTT 3885 Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 29949 ||||||||| || | || |||||| || | ||| | ||||| ||| | || ||| Sbjct 3884 GGGGTTCCACGCGCTCAGGATGATCCGGCGGTCGTGCGGGTTCGTCCGCAGCTTGTGCAC 3825 Query 29950 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNN 30009 | | | |||||| || || ||| || | |||||| | Sbjct 3824 GACCTCCGCCAGCTGGTCGACGCCCTGGCCGGCGTAGTCCGCGCGCGCGTCGACGTACTC 3765 Query 30010 NNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30069 |||| |||| |||||||||||||||||| || || ||||| ||||| || | ||| Sbjct 3764 GGCGCCGAAGTGCCGCCACTGGAACCCGTACACGGGGCCGAGGTCGCCCTCCTCGCGGTG 3705 Query 30070 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30129 | | | |||| |||||| || | | || |||||| ||||||||||||| || || Sbjct 3704 CGCCAGGCCCACGCTGTCCAGGAACGCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCC 3645 Query 30130 CTTCTCGGAGAGC 30142 || | || |||| Sbjct 3644 CTGCGCGCTGAGC 3632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406131445018690