Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20austroafricana_20[genbank_20GCA_5F001051155.1_202015- 07-09] 6,415 sequences; 44,668,886 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1214 154 1e-32 seq373 134 1e-26 seq6049 125 5e-24 seq2574 120 2e-22 >seq1214 Length=170273 Score = 154 bits (170), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||| |||||| ||||||||||| |||| | Sbjct 100661 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 100720 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| || |||||||| || || ||||||| ||||| || |||| || Sbjct 100721 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 100780 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 100781 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCA 100838 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| | || || ||||| |||||||||||||| |||||||| ||||||||| Sbjct 100839 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 100891 >seq373 Length=59380 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || || |||||| ||||||||||| || | Sbjct 268 CCACCACGCAGACGCAGCACCAAGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAC 209 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| ||||||||||| || || ||||| | ||||||||| |||| || Sbjct 208 AGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCTGGGGGA 149 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| ||||| || ||||| ||||| | | || || || | ||||||||| Sbjct 148 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCGATCGTATCCGATGATTCCACC 89 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| ||||| |||||||| |||||||||||||| Sbjct 88 TCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 42 >seq6049 Length=106314 Score = 125 bits (138), Expect = 5e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| ||||| |||| Sbjct 70150 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 70209 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| ||||| ||||| | ||| | ||| ||||| ||| ||||| ||| | | Sbjct 70210 TCAATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT 70269 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||||| || |||||||| | || || ||||| ||||| ||||||||||||| Sbjct 70270 CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 70329 Query 44328 AG 44329 || Sbjct 70330 AG 70331 >seq2574 Length=14985 Score = 120 bits (132), Expect = 2e-22 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || || |||||||| || || || | Sbjct 1 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAA 60 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | ||| | ||| ||||| ||| ||||| ||| || ||| Sbjct 61 TCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 120 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| || ||||||||||| || Sbjct 121 --CGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 178 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 179 GAAGATCTGCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359962254938055