Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14]
954 sequences; 42,624,563 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq50 136 5e-27
seq86 113 5e-20
>seq50
Length=202051
Score = 136 bits (150), Expect = 5e-27
Identities = 380/578 (66%), Gaps = 14/578 (2%)
Strand=Plus/Minus
Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055
|| ||||||| | ||| || |||| | || || || ||||| |||||||| || |||
Sbjct 88436 GGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTCATGAAGAGATCCGGGATC 88377
Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
|| || || | || || || | | | || || ||||| ||||| ||
Sbjct 88376 CAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTCCGCAGG 88317
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
||||||||| | | | ||||| ||||| || |||| ||| |||| | | | || ||
Sbjct 88316 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCGGGG 88257
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| || || || |||||||| | ||||| || ||||| || | || | |||||| ||
Sbjct 88256 CGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGCAACATAGGG 88197
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295
|| || |||||||| | || ||||| || | ||| ||| || ||||||| ||
Sbjct 88196 ATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTGGCACGGATGCGG 88137
Query 54296 CTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353
| |||| | || || || || ||||| || ||||| | || || || | |
Sbjct 88136 TGGACGTTGA--GGCCAATGCCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTCAGGG 88079
Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413
|||||||||||||||| || || || ||| |||||| || || || || |||| |
Sbjct 88078 TATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGACAACT 88019
Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473
| || || || ||||| || | || || || ||||| || || | || | |
Sbjct 88018 GCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTGAAGAACTTGTTGG 87959
Query 54474 A-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT----CCCATTGATGAATTCCTAC 54528
| | |||| ||||| ||||| | | | || || | ||| |||| || ||
Sbjct 87958 ACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAGATG----CCAAC 87904
Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566
||||||||||| | ||||||||| || | || ||||
Sbjct 87903 AGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 87866
>seq86
Length=153077
Score = 113 bits (124), Expect = 5e-20
Identities = 156/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| ||| || ||||| || ||| ||||||||||| | | || | |||||||||
Sbjct 136387 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 136328
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || || ||||| || |||||||| || ||||| || ||||| || || | |||
Sbjct 136327 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 136268
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCG 24302
|||||||| ||||| || || ||||| |||| ||| | | | || | |
Sbjct 136267 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 136208
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
| ||| || |||||| | ||||||| |||||||||||
Sbjct 136207 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 136170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593714519869920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |