Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq104 138 1e-27 seq50 107 2e-18 seq42 95.1 1e-14 seq8 84.2 2e-11 >seq104 Length=128129 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || |||||| ||||| ||||| Sbjct 59680 GTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCAAGCTG 59739 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| ||||||||||||||||||| ||||| || ||||||||||| || || Sbjct 59740 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTT 59799 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||||| ||| | || |||||||| Sbjct 59800 GGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 59859 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || |||||||| Sbjct 59860 GAGAGTCTTGACGAAGATCTGCAT 59883 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| |||||||||||| Sbjct 59908 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 59967 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| || ||||| |||||||||||||| || || Sbjct 59968 CTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 60027 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | | ||||||||| | || | || |||||||| Sbjct 60028 GGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 60087 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 60088 GAGGGTCTTGACGAAGATCTGCAT 60111 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || ||||||||||| || || || || || Sbjct 59443 CAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGACAGCGTCCGGCCGTC 59502 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 59503 TTCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 59562 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||| || || || | |||| || |||| || | || ||||||| ||| | || Sbjct 59563 TTGAATCTTGGCCTTCACGTTGTCGATCGTATCCGATGAT-TCCACCTCGAGGGTGATCG 59621 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| ||||| || || || || || ||||| Sbjct 59622 TCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 59655 >seq50 Length=202051 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGT 133283 ||||| ||||| |||||||| ||||| ||||| | |||| | || || || | || Sbjct 89297 TTGACAACTTGGAACTCGCCAGCGAGCACGCGGCGCTGATAGATGTTGGATGTATAGGGC 89238 Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 || || | ||||||||||| || ||||||| |||| || ||||||||| ||||| | Sbjct 89237 TCAAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTCGAGGCAGTGGGCATGGGCGCCATC 89178 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 ||||| ||| | || |||| || || || ||| || ||| ||| ||||||||| Sbjct 89177 AACAAGCTGTTGCGGACACCGTGCTGCTTGATCTTGGCCTTCAAGGCGTCCCAGTCCCAG 89118 Query 133404 AGAT 133407 |||| Sbjct 89117 AGAT 89114 >seq42 Length=213763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | || || |||||| Sbjct 68260 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 68201 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || ||||| || || || || || ||||||||||| Sbjct 68200 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGG 68141 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 68140 ATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTG 68081 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 68080 CCCGTGAGGGTCTTGACGAAGATCTGCATG 68051 >seq8 Length=406722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | |||||| |||||| ||||| || || ||| |||| Sbjct 173809 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 173750 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||| ||||| ||||| || ||||||||||| || || || || | ||| Sbjct 173749 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 173690 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | ||| ||||| | ||| | || ||||| ||||| || || || || Sbjct 173689 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 173631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825355908168