Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq24 114 3e-20 seq17 91.5 3e-13 >seq24 Length=263348 Score = 114 bits (126), Expect = 3e-20 Identities = 270/403 (67%), Gaps = 30/403 (7%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || |||||| |||| ||| |||| || || || || |||||||| || || ||||| || Sbjct 207745 CTGCCTCATATGCTCTTCTACGGCCCACCTGGGACCGGCAAGACCTCTACGATCCTCGCC 207804 Query 254061 CTGGCCC--GAACCCTGTTGGGCGAGGGGAA--CATGAGAGAGCGCGTGCTCGAGCTGAA 254116 || ||| || | || || | ||| ||||| ||||||| ||||||||||| Sbjct 207805 CTCGCCAAGGAGCTCTACGGGCCC----GAATTCATGAAGCAGCGCGTCCTCGAGCTGAA 207860 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTC-CA- 254172 |||||| ||||| ||||| | | | ||||| || || ||||| ||||| | | || Sbjct 207861 CGCTTCGGACGAGCGCGGCATCTCCATTGTCCGAGAGAAAGTCAAGGACTTTGCGCGCAT 207920 Query 254173 --AGATGTCGATTTCGTCGTTC--------------CAACCCGGCTGTCCGCCTTTCAAG 254216 || || ||| | | || | | |||| ||| ||||| ||||| Sbjct 207921 GCAGCTGACGAGTCCCCCGCCCGGCTATAAGGACCGCTACCC--CTGCCCGCCCTTCAAA 207978 Query 254217 CTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGA 254276 || | || || |||||||| || | |||||| || |||||| || || |||||| Sbjct 207979 ATCATCATTCTAGACGAGGCCGATAGCATGACACAGGATGCGCAGAGTGCGCTGCGCCGA 208038 Query 254277 ACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAG 254336 ||||| ||||| || | | ||||| || || ||| | ||||||||||| || Sbjct 208039 ACGATAGAGACATACAGCAAGATCACGCGATTCTGTCTGATTTGCAACTACGTCACGCGC 208098 Query 254337 ATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||| | |||||||| | ||| |||||| ||||||| Sbjct 208099 ATCATTGATCCGCTGGCGAGCAGATGCAGCAAGTTCCGATTCA 208141 >seq17 Length=322637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| ||||| || ||||| ||||| || |||||||| || || || || | | | Sbjct 70949 TCTACGGCCCTCCAGGTACAGGGAAGACTTCCACCATCCTCGCCCTCGCTCGCCGCATCT 70890 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 || | | ||||||| | || |||||||||||||| ||||| ||||| || || Sbjct 70889 ATGGAGCCGAGAACATGCGCCAGATGGTGCTCGAGCTGAATGCTTCCGACGACCGTGGCA 70830 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 | ||||| || ||||| |||| ||||| ||| || Sbjct 70829 TCGACGTAGTGCGCGAACAGATTAAGACGTTCGCC 70795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073753275219072