Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq50 324 1e-83 seq86 120 3e-22 seq104 113 4e-20 seq42 89.7 5e-13 >seq50 Length=202051 Score = 324 bits (358), Expect = 1e-83 Identities = 1233/1904 (65%), Gaps = 52/1904 (3%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 || ||| ||||| ||||| || |||| | || || | | ||||| || || ||||||| Sbjct 89646 CTGGTCGACTGTGAACTGAATCGGCGCT-GCCGCTGCCTGTGTGCGGAGGTAGTACATGC 89588 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| ||||||| |||||| || || || || || | || || | | Sbjct 89587 CAGTCTTGAGACCCAGCTTCCAACCGGTGAAGTGCATGCTAGTGATCTTGCCCATAGAAG 89528 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || ||||| | || | |||||| ||| ||||| || || || |||||||| | Sbjct 89527 GCTCACGCATGTGTATGTTCAGCGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAG 89468 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | | | || | | ||| || ||||| ||||||||||| || | |||| | Sbjct 89467 CCATCTGCACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATGT 89408 Query 22344 CTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 | || || | | ||| | |||||| || || | | ||||| || || Sbjct 89407 CATCTGGGAT-GCTGCGAATATTCTGGATAGAGCCATCCTCAGCGATGATGCGGTTCTTC 89349 Query 22403 ATCGTATCGTTCCACAAACCG-ATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACC 22459 | || ||||| ||| | || || ||| |||| ||| ||| | || || Sbjct 89348 AGGTCCTCAGACCACAGACCACACTGCAC-CAGATCCTTGAGCAGCCATG--GATTGACA 89292 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 ||||| |||||||| | | |||||||| || || ||||||||||| | || || || Sbjct 89291 ACTTGGAACTCGCCAGCGAGCACGCGGCGCTGATAGATGTTGGATGTATAGGGCTCAAAG 89232 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 | || ||||| ||||| ||||| | ||||| || || ||||| ||||||| || | Sbjct 89231 CACTCGTTGTTGCCCAGGATCTGCGAAGTCGAGGCAGTGGGCATGGGCGCCATCAACAAG 89172 Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAG 22635 ||| | | ||||||| |||| | || ||| | || || ||||||||| || Sbjct 89171 CTGTTGCGGACACCGTGCTGCTTGA--TCTTGGCCTTCAAGGCGTC--CCAGTCCCAGAG 89116 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGG 22693 ||| || ||| | ||||||| |||||| ||||| |||| | || | | || || | | Sbjct 89115 ATCAGAGGGCTTGACATTGTTCCACATGTCGTACTGCAGGATACCCTGGGAGACGG-GAG 89057 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 | ||| |||| | | ||| || |||| | | ||||| || || || | Sbjct 89056 ATCCCT-CGTATGATGAGTAGGGGCCATCAACCTTGGCAATGTCACACGATGCGGTGAGG 88998 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCT 22809 ||| ||| || || ||||||||||| | |||||||| || || || ||| Sbjct 88997 GCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCTCACGAGCCTCAGGTGAC--- 88941 Query 22810 TTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 ||| | ||||| || | || ||| || || |||| |||||| ||||| | || || Sbjct 88940 -TCGAAAGGCATGCGGAGGGCCAAGAAAGCATCGGCCAGACCCTGGACGCCCACGCCAAT 88882 Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCG 22927 || |||| || || | ||| | |||| || | |||||| || |||| Sbjct 88881 AGGACGGTGGCGCATGTTG--CTCTTGCGGGCCTCCGGAACAGGATAGTGGTTGATATCG 88824 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || | |||||| ||| | || | | || | | |||| Sbjct 88823 ATGATCTTGTTCAGGTTGCGAACGACGACCTGGGTGACTTCGTGCAGCAACTGGAAGTTA 88764 Query 22988 TAAACGCCCGATT---GTA--CAACAAACTTGTTG-ACGGCGATCGAGGCAAGATTGCAT 23041 || ||| | ||| ||| | || |||| || | | |||||| || || || ||||| Sbjct 88763 TAG-CGCTC-ATTCTCGTAGTCGACGAACT-GTGGCAGGGCGATAGACGCCAGGTTGCAG 88707 Query 23042 ACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTT 23101 || || ||||| || | | ||||| | || || || || || ||| | Sbjct 88706 ACAGCAACCTCATCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGA 88647 Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || ||||| | || |||||||||| || || ||| ||||||||| | |||| | Sbjct 88646 ATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGATCCTTGTACAACATGAAG 88587 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || |||| |||||| || | ||||| ||| || ||| | |||| || | | Sbjct 88586 GGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGCGCCTTCAGG 88527 Query 23222 CGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| | | | || || ||||||||| | ||||| || || || || | || Sbjct 88526 -GTCTTTTGGCCGCGACCCTCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCC 88468 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 ||| |||||||| |||||||| | | | || ||||| ||| |||| || || Sbjct 88467 GTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTT 88408 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || || || |||| || |||||||| ||||| || || ||| || || || || || Sbjct 88407 CTCTACACGCTTCATGAAGAGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACG 88348 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 ||||| || || ||| |||||| || || | || || || || || || ||||| Sbjct 88347 GACCTCTTCCTTTCCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCA 88288 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||| ||||| | |||||| || || || | ||||||||| |||||||||||||| || Sbjct 88287 TGGCTCCAGGTAGATGGCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCG 88228 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | | ||| || | || || ||||||| |||| ||| Sbjct 88227 GGCAGTGTTGTTGAAGACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCC 88168 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | || || | || || | | ||| |||| || || |||||||| || Sbjct 88167 AGCGATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTGAGGCCAATGCCTCCAGCCAT 88108 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || ||||| || || ||||||||||| ||||||||||| || Sbjct 88107 CTTGGAGATCATGGCACAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTT 88048 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | || | ||| ||||| |||| ||||| | ||||| |||| |||||| || Sbjct 88047 CATGTCAACGAGGAAGCACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGT 87988 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCAT 23819 || ||||| || ||| | || ||||| ||| ||||| || || | | | Sbjct 87987 TGGCGACGCGTGTGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAAGAACCCTCT 87929 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 | |||| || || || || | ||||| ||||||| ||||| || || | ||||| Sbjct 87928 CGATGTTGTCCCCCCAGATGCCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGA 87869 Query 23880 C--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | | | ||||| | ||||| ||||| ||||| | | || || || ||||| || Sbjct 87868 CGACTTTA--CCGTTGAGTTTGAGGAGATACGAACGCTCGAGGGTCTTGAAGCCAAAGTA 87811 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAAC 23981 | ||| | |||| ||||| | || || || ||| |||||| Sbjct 87810 TTGATATTGGTAGTCGCGATCATAGACAATAGCAGAA-TCAAAC 87768 >seq86 Length=153077 Score = 120 bits (132), Expect = 3e-22 Identities = 214/310 (69%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGAT 58039 || || || || ||||||||||| ||||| ||| ||||| || | || || ||| | Sbjct 136236 GCATTTGCTGCTGTCGAAGGTATTTTCTTCAGTGGC-GCTTTCGCTTCCATCTTCTGGCT 136294 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||| || || |||||||| |||||||| || |||||| | || || || ||||| Sbjct 136295 GAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAACTCATCTCTCGTGACGA 136354 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 |||||| || ||||| || || ||| | ||| ||| ||| | ||| || | Sbjct 136355 GGGTCTGCACACTGACTTCGCCTGCTTGCTGTTCTCACACCTGAACAACCGCCCCAGCAA 136414 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 | | ||| | | ||| || ||||| || || || || || || ||||| | ||||| Sbjct 136415 GCAGCGCGTGGAAGCCATCATTACCGATGCTGTTGCCATTGAGAAGGAGTTCCTGACCGA 136474 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 ||| | ||| ||| ||||||| ||||| | |||||| ||||||| || || Sbjct 136475 GGCCTTGCCGTGTGCCCTGCTCGGCATGAATGCCAACTTGATGAAGCAGTACATCGAATT 136534 Query 58280 TGTTGCCGAC 58289 || |||||| Sbjct 136535 CGTCGCCGAC 136544 >seq104 Length=128129 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || ||| | || Sbjct 59655 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 59596 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||| || | || || |||||| Sbjct 59595 GATACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 59536 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| |||||||| ||| || || || ||| Sbjct 59535 CAGCGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAAC 59476 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAG-GGGCGGTAG-AAGCGGT 31429 ||||| || || ||||| || || |||| || | ||| | || || || ||||||| Sbjct 59475 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGGCAGTAAGCGGT 59417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| |||| || || ||||| Sbjct 59883 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 59824 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || || || ||| Sbjct 59823 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 59764 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| | || ||| ||| || ||| || ||| Sbjct 59763 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAAC 59704 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || || || || Sbjct 59703 ATCCAGAAGGAGTCCACGCTCCACCTTGTCCT 59672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || ||||| | || || || | Sbjct 60114 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 60055 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 60054 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 59995 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || |||||||| || ||| | || || || | ||| || Sbjct 59994 CAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 59935 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || || || || || | ||| | ||||||| Sbjct 59934 AACATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGCGGTA 59883 >seq42 Length=213763 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 68051 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 68110 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| || | || || ||||| Sbjct 68111 CGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 68170 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||||||||| ||| | || ||| || | ||| || || Sbjct 68171 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 68230 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || ||||| || | ||| | || ||| Sbjct 68231 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGT 68279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761084235680