Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq50 129 7e-25 seq86 122 1e-22 >seq50 Length=202051 Score = 129 bits (142), Expect = 7e-25 Identities = 372/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | ||| || |||| | || || || ||||| |||||||| || ||| Sbjct 88436 GGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTCATGAAGAGATCCGGGATC 88377 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || || || | | | || || ||||| ||||| || Sbjct 88376 CAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTCCGCAGG 88317 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||||| ||||| || |||| ||| ||||| | | | || || Sbjct 88316 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCGGGG 88257 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || || || || |||||||| | ||||| || ||||| || | || | |||||| || Sbjct 88256 CGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGCAACATAGGG 88197 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 || || || || || | || ||||| || | ||| ||| || ||||||| || Sbjct 88196 ATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTGGCACGGATGCGG 88137 Query 63534 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | |||| | || || || || ||||| || ||||| | || || || | | Sbjct 88136 TGGACGTTGA--GGCCAATGCCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTCAGGG 88079 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | ||||||||||| || ||||| || || |||||| || || || || |||| | Sbjct 88078 TATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGACAACT 88019 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | ||| || || ||||| || | || || || ||||| || || | || | | Sbjct 88018 GCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTGAAGAACTTGTTGG 87959 Query 63712 A-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT----CCCATTGATGAATTCCTAC 63766 | | |||| ||||| ||||||| | | || || | ||| |||| || || Sbjct 87958 ACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAGATG----CCAAC 87904 Query 63767 TGCGACACGCATTAACATGTGCTGAGG 63793 ||||||||||| | ||||||||| || Sbjct 87903 AGCGACACGCATCAGCATGTGCTGTGG 87877 >seq86 Length=153077 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| || ||||| || ||||||||||||||| | | || | |||||| || Sbjct 136387 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 136328 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| || ||||| || ||||||||||| | || Sbjct 136327 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 136268 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 33749 ||||| || ||||| || |||||||| |||| ||| | || | || | | Sbjct 136267 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 136208 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| || |||||| | ||||||| ||||||||||| Sbjct 136207 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 136170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810089425120