Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq50 154 2e-32 seq86 113 6e-20 >seq50 Length=202051 Score = 154 bits (170), Expect = 2e-32 Identities = 393/593 (66%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||||| | ||| || || | | | ||| || ||||| Sbjct 88451 CCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTCATG 88392 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| || || | || || || | | | ||| || ||||| Sbjct 88391 AAGAGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 88332 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | ||||| ||||| || |||| ||| ||| Sbjct 88331 TGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATG 88272 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || || || || |||||||| | ||||| || ||||| || | Sbjct 88271 GCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAG 88212 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | |||||| || || || |||||||| | || ||||| || | ||| ||| || Sbjct 88211 ACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCG 88152 Query 72274 CTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || | | |||| | || || || || ||||| || ||||| | | Sbjct 88151 GTGGCACGGATGCGGTGGACGTTGA--GGCCAATGCCTCCAGCCATCTTGGAGATCATGG 88094 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | ||||||||||||||||| || || || ||| |||||| || || | Sbjct 88093 CACAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGA 88034 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| || || || || ||||| || | || || || ||||| | Sbjct 88033 AGCACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTG 87974 Query 72452 TAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATAT----CCCA 72506 | || | || | |||| |||| ||||| ||||||| | | || || | ||| Sbjct 87973 TGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCC 87915 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGA 72559 |||| || || ||||||||||| | ||| ||||| || | || |||| Sbjct 87914 CAGATG----CCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 87866 >seq86 Length=153077 Score = 113 bits (124), Expect = 6e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| || ||||| || |||||||||||| || | | || | ||||||||| Sbjct 136387 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 136328 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || |||||||| || ||||| || || || || || | ||| Sbjct 136327 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 136268 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCA 42232 ||||| || ||||| || || ||||| |||| ||| | || | || | || Sbjct 136267 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 136208 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| || |||||| | ||||||| ||||||||||| Sbjct 136207 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 136170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131196665040