Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq50 150 3e-31 seq86 127 3e-24 >seq50 Length=202051 Score = 150 bits (166), Expect = 3e-31 Identities = 349/522 (67%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| |||||||| || || || ||| | ||| ||||| |||| || Sbjct 88228 CGATACGTCGATCAGGGTGGCAATAAGCGCCCCGGTGCTTTTGCCATCTACCTGGAGCCA 88287 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || |||| |||| || ||| || ||||||| Sbjct 88288 TGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGAAAGGAAGAGGTC 88347 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || ||| |||||| | || ||| | ||||||||||| || | Sbjct 88348 CGTGCTCGTGACCTCTTCCTTGCCCTCTGGATCCCGGATCTCTTCATGAAGCGTGTAGAG 88407 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || ||||| || |||| |||| Sbjct 88408 AAGAACGGCGACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTAC 88467 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 ||||| ||||| ||||| |||| | ||||||| ||||| || || | | | Sbjct 88468 GGCGAGGAGTTCGAGGCTCTGTACGAGAAGTACGAGCGCGAGGGTCG---CG-GCCAAAA 88523 Query 97164 GTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | | |||| || ||| | |||||| | |||||| ||||| || | Sbjct 88524 GACCCTGAAGGCGCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 88583 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| | ||||||||| || || ||||| |||||||| || | ||||| Sbjct 88584 CCCCTTCATGTTGTACAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 88643 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||| ||||||| || ||||| || || | ||||| | |||| || ||| || Sbjct 88644 CATTCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGATGAGGTTGC 88703 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || ||| ||||| || || ||||| |||| || || Sbjct 88704 TGTCTGCAACCTGGCGTCTATCGCCCTGCCACAGTTCGTCGA 88745 >seq86 Length=153077 Score = 127 bits (140), Expect = 3e-24 Identities = 195/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||| |||| ||||| ||||| | || ||| | || ||| Sbjct 135765 ATTTGGCAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCTGAGGAGATTGACCTG 135824 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||||| |||| ||| | | |||||||| || ||| | | || || || Sbjct 135825 TCTAAGGACCTGCACGACTGGAACAACCGTTTGACCGATGACGAGAAATACTTCATCTCC 135884 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | ||||||||||||| || || || ||||| ||||| || || | || Sbjct 135885 CACATCCTCGCCTTCTTTGCCGCTTCGGACGGCATCGTTAACGAAAACTTGATCGAGCGC 135944 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| | ||| | ||||| |||| || || ||||| ||||| | |||||| Sbjct 135945 TTCAGTGCTGAGGTCCAGATTCCTGAGGCCCGTTGTTTCTACGGCTTCCAGACCATGATG 136004 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| | ||||| || | |||||| |||||||| Sbjct 136005 GAGAACATCCACTCCGAGACTTACTCTCTCCTGATTGA 136042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050362869040