Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq306 104 4e-18 seq40 95.1 2e-15 >seq306 Length=33052 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || ||||| ||||| || || Sbjct 31226 GCCAAGCGTCACCGGAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCCAT 31284 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 31285 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 31325 Score = 86.0 bits (94), Expect = 1e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 16570 CTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629 |||||| || || |||| |||||| || ||| ||||||||||| || || ||||| Sbjct 31456 CTTCCTGGAGGGTGTCATCCGTGATGCCGTCACCTACACCGAGCACGCCAAGCGCAAGAC 31515 Query 16630 TGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 ||||||||| | || |||||||||| |||| || |||||||| | | || ||||| Sbjct 31516 CGTCACCTCCCTCGACGTCGTCTATGCCCTGAAGCGACAAGGCCGCACCCTCTACGGTTT 31575 Query 16690 TGGAAGTTAA 16699 || ||||| Sbjct 31576 CGGTGGTTAA 31585 >seq40 Length=223668 Score = 95.1 bits (104), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | |||| || || || |||||||| || || |||||||| || || Sbjct 68777 GCCAAGCGCCACCGAAAGATC-CTCCGTGACAACATCCAGGGTATTACCAAGCCCGCCAT 68719 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 68718 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074327751122