Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq50 150 2e-31 seq86 116 5e-21 >seq50 Length=202051 Score = 150 bits (166), Expect = 2e-31 Identities = 394/596 (66%), Gaps = 14/596 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||||| | ||| || |||| | || || || ||| Sbjct 88454 AGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTC 88395 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| || || | || || || | | | || || ||| Sbjct 88394 ATGAAGAGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTT 88335 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || ||||||||| | | | ||||| ||||| || |||| ||| Sbjct 88334 CCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAG 88275 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || || || || |||||||| | ||||| || ||||| || Sbjct 88274 ATGGCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTG 88215 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | |||||| || || || |||||||| || || ||||| || | ||| ||| Sbjct 88214 AAGACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAG 88155 Query 63320 CCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || ||||||| || | |||| | || || || || ||||| || ||||| | Sbjct 88154 CCGGTGGCACGGATGCGGTGGACGTTGA--GGCCAATGCCTCCAGCCATCTTGGAGATCA 88097 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 || || || | ||||||||||||||||| || || || ||| |||||| || | Sbjct 88096 TGGCACAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGA 88037 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || |||| || || || || ||||| || | || || || |||| Sbjct 88036 GGAAGCACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGT 87977 Query 63498 GAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT----C 63552 | || || | || | || | |||| ||||| ||||||| | | || || | | Sbjct 87976 GTGTGAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCC 87918 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 || |||| || || ||||||||||| | ||||||||| || | || |||| Sbjct 87917 CCCCAGATG----CCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 87866 >seq86 Length=153077 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| ||| || ||||| || ||| ||||||||||| | | || | ||||||||| Sbjct 136387 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 136328 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || |||||||| || ||||| || ||||| || || | ||| Sbjct 136327 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 136268 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 32828 |||||||| ||||| || || ||||| |||| ||| | || | || | | Sbjct 136267 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 136208 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 | ||| || |||||| | ||||||| ||||||||||| Sbjct 136207 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 136170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624443938400