Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq42 123 2e-23 seq104 113 4e-20 seq8 98.7 8e-16 >seq42 Length=213763 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 68052 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 68111 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||||||||| || || ||| Sbjct 68112 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 68171 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| ||| ||||||| |||||| Sbjct 68172 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 68231 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || |||| |||| || ||| Sbjct 68232 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGT 68279 >seq104 Length=128129 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| |||| || || |||||| | | Sbjct 59655 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 59596 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || ||||||||||||||||||||||| || || || Sbjct 59595 GATACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 59536 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | || || ||| || | || || |||||| Sbjct 59535 CAGCGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAAC 59476 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| |||| || || Sbjct 59475 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 59429 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | ||||| || || |||||||||| || || || Sbjct 60114 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 60055 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || || ||||||||||| || || || || Sbjct 60054 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 59995 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || || || ||| | |||||| ||||||| ||||||| ||| Sbjct 59994 CAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 59935 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 59934 AACATCCAGAAGGAGTCGAC 59915 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || ||||| | || Sbjct 59883 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 59824 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || |||||||||||||| || || ||||| Sbjct 59823 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 59764 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| |||||| | ||||| |||||| Sbjct 59763 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAAC 59704 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 59703 ATCCAGAAGGAGTCCAC 59687 >seq8 Length=406722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| ||||| | |||| ||| | ||| | |||| Sbjct 173646 ACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 173705 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || |||||||| || | || || |||||||| Sbjct 173706 AAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATTGATCTTCGCCGGCAAG 173765 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| |||||| | ||||| |||||||| || || Sbjct 173766 CAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 173809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723119875010