Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq86 125 1e-23 seq70 95.1 2e-14 seq11 93.3 9e-14 >seq86 Length=153077 Score = 125 bits (138), Expect = 1e-23 Identities = 293/432 (68%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | || ||||| ||||||||||||||| ||||| || Sbjct 136645 TCGAAGAAGTTGGTCTTCCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTAGTA 136586 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || |||| || ||||| || || || || | Sbjct 136585 GACTTGTAGATCTTCTCGTTGCCGAGAGCGACGAGGAGACGGTCGGCGACGAATTCGATG 136526 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||| | | |||||||| | || ||| || | ||||| | | Sbjct 136525 TACTGCTTCATCAAGTTGGCATTCATGCCGAGCAGGGCACACGGCAAGGCCTCGGTCAGG 136466 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG-TGC---CAGAGA 251798 || ||||| || ||||||| || || | || || | ||| | ||| | | | Sbjct 136465 AACTCCTTCTCAATGGCAACAGCATCGGTAATGATGGCTTCCACGCGCTGCTTGCTGGGG 136406 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAA-CTGTTGGTGCAGACCCTCG 251856 | | |||||| || | |||| |||| | || || || | || ||||||||||||| Sbjct 136405 CGG-TTGTTC---AGGTGTGAGAACAGCAAGCAGGCGAAGTCAGT--GTGCAGACCCTCG 136352 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| ||||| |||||||| | |||||||||||||| ||||| ||| | ||| Sbjct 136351 TCACGAGAGATGAGTTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGC 136292 Query 251917 CAGAAGATTGC-GCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||||||| | || |||| ||| ||| | | ||| |||||| | ||||||| Sbjct 136291 CAGAAGATGGAAGCGAAAGCG-CCACTGAAGAAAATACCTTCGACAGCAGCAAATGCAAC 136233 Query 251976 AAGGCGCTCAGC 251987 |||||||| ||| Sbjct 136232 AAGGCGCTGAGC 136221 >seq70 Length=170380 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || ||||||||||||||||| || ||| |||||||||| || | Sbjct 7651 AGTCGGCTCTCTGTCTGGCGGTTGGAAGATGAAGCTCGCTCTCGCTCGCGCCATGCTGCA 7710 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 | ||||||||||| || || || || || || |||||| |||| Sbjct 7711 GAAGGCCGATGTCCTCCTCCTGGACGAACCGACTAACCACTTGGA 7755 Score = 93.3 bits (102), Expect = 9e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||| ||||| || ||||| || || ||||| | || || ||||||||| Sbjct 8133 TCATTGGTCCCAACGGTGCTGGCAAGTCGACTCTCATCAAGCTGCTCACCGGCGAGACC- 8191 Query 280234 AGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | ||| | || | | | |||||| ||||| |||| || | ||| || ||| Sbjct 8192 ATCCCAAGTACCGGAAAGGTCGAGAAGCACCCCAATCTGCGTATCGGATACATCAAGCAG 8251 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||| | | ||| |||||| |||||||| | ||| || ||||| ||| | |||||| Sbjct 8252 CACGCCCTGGAACACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAGTGG 8311 Query 280353 CGCTA 280357 ||||| Sbjct 8312 CGCTA 8316 >seq11 Length=391361 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| ||||| || ||||| ||||| || ||||||||||| |||| || || Sbjct 75473 CTCCCGTATTGCCGTCATCGGTCCCAACGGTGCCGGCAAGTCTACCCTGGTCAACGTTCT 75532 Query 280220 GACTGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGAT 280276 || ||| | || |||| ||||| | ||| ||| ||||| || || Sbjct 75533 CTGCGGTGAGCTGATCC---CCACCGAGGGTGAGATCTGGTCGCACGAGAACATCCGTAT 75589 Query 280277 GGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAA 280336 || ||| || ||||||||||| ||||||||| ||||||||||||| ||| ||| Sbjct 75590 TGCGTACATCAAGCAGCACGCTTTTGCCCACATCGATAACCACCTGGACAAGACGCCTTC 75649 Query 280337 CCAATACATTCAGTGGCG 280354 | |||||||| ||||| Sbjct 75650 GGAGTACATTCAATGGCG 75667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/203 (71%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG- 279759 ||| ||||| ||||||||||||||||||||||| || || ||| | || || | Sbjct 75017 TTCCCTGTCCGGTGGTTGGAAGATGAAGCTGGCTCTGTGCCGTGCCGT----CTTCGAGA 75072 Query 279760 ---CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCT 279816 |||| | || ||||| || ||||| ||||||||| |||| || ||||| |||| Sbjct 75073 ACCCCGACATTCTGCTGCTGGACGAGCCCACCAACCACTTGGATGTCAAGAACGTGGCCT 75132 Query 279817 GGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 |||| | | |||||| | | | | | ||| | ||| |||| ||||| ||||||| Sbjct 75133 GGCTTGAGGACTACCTCAAGA-ACAGCA-CATG-CACGTCCATCATGGTCTCCCACGACT 75189 Query 279877 CTGGCTTCCTAGATGCCGTGTGC 279899 |||| ||||| | ||||||| Sbjct 75190 CTGGTTTCCTGAACCGCGTGTGC 75212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824236622314