Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq42 187 5e-42 seq104 176 8e-39 seq8 134 3e-26 seq11 116 7e-21 seq3 109 1e-18 seq70 86.0 1e-11 >seq42 Length=213763 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 68278 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 68219 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | |||||||| || ||| Sbjct 68218 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 68159 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 68158 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 68099 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||| || || |||||||||||||||||||| |||||||| ||| Sbjct 68098 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 68048 >seq104 Length=128129 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| ||||| ||||| || || ||||| || || || Sbjct 59429 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGAC 59488 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || ||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 59489 AGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCTGGGGGA 59548 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||||| ||| ||||| || || | |||||| || Sbjct 59549 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCGATCGTATCCGATGATTCCACC 59608 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||| |||||||||||||| || ||||| Sbjct 59609 TCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 59655 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| ||||||||||| || |||||||| || ||||| Sbjct 59657 CCACCGCGGAGACGGAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 59716 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || || || || || Sbjct 59717 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 59776 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| ||| ||||||||||| | || || || Sbjct 59777 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACC 59836 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||| ||||||||||| |||||||| Sbjct 59837 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 59883 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| ||||| ||||| || |||||||| || |||||| Sbjct 59885 CCGCCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAG 59944 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 59945 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGG 60004 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 60005 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 60064 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 60065 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 60111 >seq8 Length=406722 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | ||||| || | |||||| |||||||| || Sbjct 173809 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 173750 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || ||||| || || || || || |||||||| || ||||| ||||||||| ||| Sbjct 173749 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 173690 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || ||||| |||||||| ||||| Sbjct 173689 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 173631 >seq11 Length=391361 Score = 116 bits (128), Expect = 7e-21 Identities = 433/669 (65%), Gaps = 35/669 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| || ||||||| || ||| ||||||||||||| || || ||| ||||| Sbjct 75667 CGCCATTGAATGTACTCCGAAGGCGTCTTGTCCAGGTGGTTATCGATGTGGGCAAAAGCG 75608 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | |||||| || || ||||| ||| ||| | | | || || || Sbjct 75607 TGCTGCTTGATGTACGCAATACGGATGTTCTCGTGCGACCAGATCTCACCCTCGGTGGGG 75548 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || ||| ||| || |||| || |||| |||||| ||||| ||||| || || Sbjct 75547 ATCAGC-TCACCGCAGAGAACGTTGACCAGGGTAGACTTGCCGGCACCGTTGGGACCGAT 75489 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA-----GATCTCA 225214 ||| |||| ||||| || | ||| || | | | | ||| | || | Sbjct 75488 GACGGCAATACGGGAGCCCAGGGAGCACTGGAAGGTGATAT--CCGAAATCTGGGGCTTA 75431 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTCC 225268 ||| | |||| ||| ||| | ||||||| ||| || | || Sbjct 75430 GGGGTGTTGGGGTACTGGAAGCCCATCTTGTTGGCACGCAG------GATAGCCTTGGCC 75377 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | ||| || ||||| || ||||| ||||| ||| || | | | Sbjct 75376 TTGGTCTTGACACCATCGAGGAAACCAGGCTCAGGGAAGGAGAACTCCATCTCGGATGCG 75317 Query 225329 TTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCC--ACGAAAGCAGACAGGTTTC 225386 ||| ||| |||| || ||| |||| | | |||| ||||| | |||||| | Sbjct 75316 CCCAGCTCGAAGTACGACTTAGCAGCGGG--GTTCTGCCTCACGAAGTCCTCCAGGTTGC 75259 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGT 225446 | || | || ||||||||| | || |||| | || || | |||||| || Sbjct 75258 CCTTGTACGTCTTGAGCTTGAAGCGCT---CGTAGTTGACGATGTACTGGCACACGCGGT 75202 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAGG 225505 ||||| |||||||||||||| || |||||||||| || || | | ||||||| Sbjct 75201 TCAGGAAACCAGAGTCGTGGGAGACCATGATGGACGTGCATGTGCT----GTTCTTGAGG 75146 Query 225506 TGCGTGATGA-GCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 | || | | |||| |||||||| |||| |||| |||||| || || |||||||| || Sbjct 75145 TA-GTCCTCAAGCCAGGCCACGTTCTTGACATCCAAGTGGTTGGTGGGCTCGTCCAGCAG 75087 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||| ||||| | | || || ||| || |||| ||||||||| ||||| || || Sbjct 75086 CAGAATGTCGGGGTTCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACC 75027 Query 225625 GGACAGGGA 225633 ||||||||| Sbjct 75026 GGACAGGGA 75018 >seq3 Length=522148 Score = 109 bits (120), Expect = 1e-18 Identities = 189/268 (71%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 275303 GGTTTCAATATC-TCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGG 275361 ||||||||| | | ||||| || | || || | |||||||||| || ||||||||| Sbjct 337309 GGTTTCAATTACATTGTGCGGGATGATCGACCTCGATTGAAGAAGGCAGGTAACCTCCGG 337368 Query 275362 TCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCCA 275421 | || ||||| |||||| || || || ||||||||||||||||| |||||||| || Sbjct 337369 TGGGCATTTACACGGACAGATGGAGACTTTTTTGTCATCTTTGACGCAGACTTCTGTCCT 337428 Query 275422 AGGCCCGACTTCCTCGAGGAGACACTTGGC-AGGATGAAGGCAGATCCCACGATTGCCAT 275480 | || |||||| || | ||| | | | || | | | ||| || ||| ||||| Sbjct 337429 CGACCAGACTTCATCAAAGAGCTTATCGTCGAGCACCTTGAC-GATGACAAGATCGCCAT 337487 Query 275481 CTTCCAAACTCCCCAGTTCTTCGAGCAGCGCA-ATGAGCAGAACTACGTGGAGAAGGGAG 275539 |||| | ||| ||||| ||| | | || ||||||||| | || ||| |||| | Sbjct 337488 TGTCCAGAGTCCACAGTTTTTC-CGTGTCACAGATGAGCAGACGTGGGTTGAGCAGGGGG 337546 Query 275540 CCGGCGCCGTCCAGGAGCTCTTCTATCG 275567 |||| || || ||||||||||| || Sbjct 337547 CCGGTGCTACGCAAGAGCTCTTCTACCG 337574 >seq70 Length=170380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||| ||| | |||||||| |||| | || | | Sbjct 8316 TAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCATCTCGACGTGTTCCAGG 8257 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| ||||| |||||| || || | | Sbjct 8256 GCGTGCTGCTTGATGTATCCGATACGCAGATTGGGGTGCTTCTCGACCTTTCCGGTACTT 8197 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | ||||||||| || | |||||| ||||| ||||| ||| Sbjct 8196 GGGATGGTCTCGCCGGTGAGCAGCTTGATGAGAGTCGACTTGCCAGCACCGTTGGGACCA 8137 Query 225158 AT 225159 || Sbjct 8136 AT 8135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611409652880