Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq104 161 2e-34 seq42 122 2e-22 seq86 102 2e-16 >seq104 Length=128129 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | |||| || || ||||| || ||||||| Sbjct 59657 CCACCGCGGAGACGGAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 59716 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||| |||||||| ||| ||| Sbjct 59717 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 59776 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | ||| ||| || || Sbjct 59777 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACC 59836 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 59837 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 59883 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||||| || |||||||| | || || || |||||| Sbjct 59465 TCCTTCTGAATGTTGTAGTCAGACAGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCGAAG 59524 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| || || || || || || || || || |||||| Sbjct 59525 ATAAGACGCTGCTGG---TCTGGGGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACG 59581 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||||| || ||||| ||||||||||| || ||||| |||||| Sbjct 59582 TTGTCGATCGTATCCGATGATTCCACCTCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTG 59641 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 59642 ACGAAGATTTGCAT 59655 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||| || || ||||| || ||||||| ||| ||||| || || Sbjct 59900 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 59959 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||| ||||| ||||| || ||||| || || || ||| Sbjct 59960 TCGAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 60019 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || || || || | || || || || || || ||||| ||| Sbjct 60020 TGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 60079 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||||||||| |||||||| Sbjct 60080 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 60111 >seq42 Length=213763 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||||| | Sbjct 68278 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 68219 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||| |||||||| |||||| Sbjct 68218 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGG---TCTGGG 68162 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | ||| || || Sbjct 68161 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 68102 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 68101 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 68048 >seq86 Length=153077 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || |||| ||||||||| | | ||||| || || ||||||||||| || || ||| || Sbjct 136492 TGCTCGGCATGAATGCCAACTTGATGAAGCAGTACATCGAATTCGTCGCCGACCGTCTCC 136551 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | ||||| | ||||| || | || || |||| ||| ||||| Sbjct 136552 TCGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTACTAACCCTTTCGACTTCATGGAGA 136611 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 || || || | || ||||| ||||||||||| |||||||| | ||||| || Sbjct 136612 ACATCTCCCTTGGCGGGAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGG 136671 Query 269330 CTGGTGTAATG 269340 ||||||| ||| Sbjct 136672 CTGGTGTCATG 136682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639980936812