Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq104 120 3e-22 seq8 102 8e-17 seq42 96.9 3e-15 >seq104 Length=128129 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | || | ||| ||||| || || || ||||| ||| | Sbjct 59657 CCACCGCGGAGACGGAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 59716 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||| | ||||||||||| ||||| Sbjct 59717 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 59776 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| |||| |||||| | ||| || Sbjct 59777 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG-TCGATGGTGTCGGACGACTCCAC 59835 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||| ||||| || || || |||||||| Sbjct 59836 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 59883 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 59914 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTACC 59973 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 59974 AGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 60033 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | |||||| || | || | || |||||||| || || Sbjct 60034 GACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 60093 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 60094 CTTGACGAAGATCTGCAT 60111 Score = 102 bits (112), Expect = 8e-17 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | |||| |||||| || | ||| ||||| || ||||| ||||| Sbjct 59423 TACTGC-CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 59481 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || ||| || || || ||||| || || ||| |||| | |||||||| || Sbjct 59482 GTCAGACAGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTC 59541 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || ||||||||||| || || ||| | |||| |||| || |||| Sbjct 59542 TGGGGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTG-TCGATCGTATCCGATG 59600 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| ||| | ||| ||||| ||||| || || || || || ||||| Sbjct 59601 ATTCCACCTCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 59655 >seq8 Length=406722 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 173809 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 173750 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| ||||| ||||| || |||||||||||| ||| || ||||| |||| || Sbjct 173749 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TC 173691 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | | ||| || || | ||| | || ||||| ||||| || || || || Sbjct 173690 GATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 173631 >seq42 Length=213763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 68281 GCACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 68222 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || || ||||| || |||||| |||||| ||||| || || || Sbjct 68221 GAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGG 68162 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 68161 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 68102 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || ||||| || || || || || || ||||||||| Sbjct 68101 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 68051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495129652960