Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq86 147 2e-30 seq42 145 8e-30 seq104 138 1e-27 seq8 96.9 3e-15 >seq86 Length=153077 Score = 147 bits (162), Expect = 2e-30 Identities = 332/486 (68%), Gaps = 20/486 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAA-ATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || ||| |||||| | ||| | ||| || || || ||||| Sbjct 136648 TTCTCGAAGAAGTTGGTCTT-CCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTT 136590 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 | | |||||| ||| | |||||| || ||||||| || | |||||| ||||| Sbjct 136589 AGTAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CGACGAGGAGACGGTCGGCGACGAA 136533 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTT 132799 |||||||| ||| ||| | | ||| | || ||||| |||| ||||| || | Sbjct 136532 TTCGATGTACTGCTTCATCAAGTTGGCATTCATGCCGAGCAGG-GCACACGGCAAGGCCT 136474 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT---TTCCCTAACGCGCG 132856 |||| || || | ||| ||||| || || ||||| | ||| |||| |||||| Sbjct 136473 CGGTCAGGAACTCCTTCTCAATGGCAACAGCATCGGTAATGATGGCTTCC---ACGCGCT 136417 Query 132857 CCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 | ||| || || | || || ||||| |||||| || ||||| |||| | Sbjct 136416 GCTTGCTGGGGCGGTTGTTCAGGTGTGAGAACAGCAAGCAGGCGAAGTCAGTGTGCAGAC 136357 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | || |||||||||||| ||| |||| ||| ||||| || || || || | Sbjct 136356 CCTCGTCACGAGAGATGAGTTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCT 136297 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| |||||| ||| ||||| | || ||||| || || || | Sbjct 136296 TCAGCCAGAAGATGGAAGCGAAAGCGCCACTGAAGAAAATACCTTCGACAGCAGCAAATG 136237 Query 133037 CCACCAGGCGCTCGCCGAACGT-GGCT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTC 133094 | || ||||||| || | || | || | | ||| |||||| | ||| ||||| || Sbjct 136236 CAACAAGGCGCTGAGCGTAGGTAGACTCACGGTCCTG--GATCCACCTCAGAGCCCAGTC 136179 Query 133095 GGCCTT 133100 |||||| Sbjct 136178 GGCCTT 136173 Score = 131 bits (144), Expect = 2e-25 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| | | || |||||||| || || || ||||| | | Sbjct 136021 TCGGAGTGGATGTTCTCCATCATGGTCTGGAAGCCGTAGAAACAACGGGCCTCAGGAATC 135962 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || || | ||| ||||||| || |||||||| ||||||||||| ||||| Sbjct 135961 TGGACCTCAGCACTGAAGCGCTCGATCAAGTTTTCGTTAACGATGCCGTCCGAAGCGGCA 135902 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAG 133371 || ||||| || | ||| |||||| | ||||| ||| |||| || | |||| Sbjct 135901 AAGAAGGCGAGGATGTGGGAGATGAAGTATTTCTCGTCATCGGTCAAACGGTTGTTCCAG 135842 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 ||| || |||||| |||||||| | |||||| ||||||| || ||||||||| || Sbjct 135841 TCGTGCAGGTCCTTAGACAGGTCAATCTCCTCAGCGGTCCAGAAGGACGCCTCGTGCTTC 135782 Query 133432 TTGTACAT 133439 |||||||| Sbjct 135781 TTGTACAT 135774 >seq42 Length=213763 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 68052 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 68111 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | |||||| Sbjct 68112 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 68171 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| || |||||| |||||||||| Sbjct 68172 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 68231 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| ||||| Sbjct 68232 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 68266 >seq104 Length=128129 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| |||| || || | | Sbjct 59655 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 59596 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || || | ||||| ||||| |||||| | ||||| Sbjct 59595 GATACGATCGACAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 59537 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| |||||||| |||| || || || |||||||| Sbjct 59536 GCAGCGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAA 59477 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||||||||| |||||||||||| || | || || Sbjct 59476 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 59429 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| || Sbjct 60114 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 60055 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || || | ||| Sbjct 60054 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 59995 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| ||| || || ||||| || || | ||||||||| ||||||| Sbjct 59994 CAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 59935 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| ||||||| || | || || ||| || | ||||| Sbjct 59934 AACATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGCGG 59885 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 59883 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 59824 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || | || || Sbjct 59823 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCA 59765 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 59764 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAA 59705 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | ||||| || | || || ||| Sbjct 59704 CATCCAGAAGGAGTCCACGCTCCACCTTGTCCTCCGT 59668 >seq8 Length=406722 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| | || || ||| | |||||| | | Sbjct 173631 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 173690 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || | || |||| ||||| ||||| || || | || |||||||| | Sbjct 173691 GACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATT 173749 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | ||||| || ||||||||||||||| || Sbjct 173750 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 173809 Query 38432 GG 38433 || Sbjct 173810 GG 173811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166835439360