Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq86 105 2e-17 seq50 102 2e-16 seq27 93.3 1e-13 >seq86 Length=153077 Score = 105 bits (116), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || ||||| | ||||||||| | | |||||||||||| ||| || Sbjct 136156 TTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGAC---CGT--GA 136210 Query 133497 GTTTTGCTAC-----TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551 || | |||| || || ||||| ||||||| || || || ||||| |||||||| Sbjct 136211 GTCTACCTACGCTCAGCGCCTTGTTGCATTTGCTGCTGTCGAAGGTATTTTCTTCAGTGG 136270 Query 133552 TGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 || ||| || || || ||||| || ||||||||| | | ||||| ||| || || Sbjct 136271 CGCTTTCGCTTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTC 136330 Query 133612 TAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||||||| || || | ||||||| || ||||| || || ||| Sbjct 136331 CAACGAACTCATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCC 136376 >seq50 Length=202051 Score = 102 bits (112), Expect = 2e-16 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||| |||||||| || || | ||| || | ||||| || ||||||||| || Sbjct 88334 CCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAG 88275 Query 156039 ATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||||| ||| | ||| |||||||||||| || || || ||||| || ||| Sbjct 88274 ATGGCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTG 88215 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146 ||||||| | |||||| || || |||||||| ||||| ||||| || |||| Sbjct 88214 AAGACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGA 88163 >seq27 Length=255484 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| |||| ||||||||||||||| |||||||| |||||||| | |||||||| | Sbjct 17173 TGCACCATGTGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAAGCCACCATCTCT 17232 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 ||| | ||||||| | || ||||| || | | || || || || ||| ||| Sbjct 17233 AGCACGACCCTCGACGGGTTGACGCGTCATGATCTGCACTGGGCCACGGGCGCGCGCATG 17292 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| |||| ||||| || ||||||||| ||| | | || |||| ||| Sbjct 17293 GATCTTGTCATCCACCATGTGACGGAGACGCTGATAGTACGTCGGGCCGAAGAA 17346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799609789498