Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq50 149 6e-31 seq104 98.7 9e-16 seq42 95.1 1e-14 >seq50 Length=202051 Score = 149 bits (164), Expect = 6e-31 Identities = 458/703 (65%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 |||||||||||||| ||||| || | ||||| || |||||| ||| | ||| || Sbjct 88508 TCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCG 88449 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || || ||||| || | ||| |||||||| || || ||| ||||||| Sbjct 88448 GGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCTACACGCTTCATGAAG 88389 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 |||||||| ||||| | || | | | || || || |||||| || | Sbjct 88388 AGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGG 88329 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || || || ||||| || || || |||||||||||||| ||||| |||||||| Sbjct 88328 TTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 88269 Query 139537 ATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | || || || |||||||| |||||||||| ||| ||| || ||||| || Sbjct 88268 AAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACA 88209 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTG 139650 |||||||| || | || | | || |||||||||| | |||| ||| | | || Sbjct 88208 CGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTG 88149 Query 139651 CGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACG 139710 || |||| | || || |||| ||| || || || | | ||||| || | | Sbjct 88148 ---GCACGGATGCGGTGGACGTTGAGGCCAATGCCTCCAGCCATCTTGGAGATCATGGCA 88092 Query 139711 CAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 || | || || || || || |||||||| |||| ||| || || ||| Sbjct 88091 CAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAG 88032 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || ||||| | |||| | ||||||||| ||||| || || |||||| ||| Sbjct 88031 CACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTG 87972 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | || ||||| | | ||| || || | | ||| | || | || | Sbjct 87971 AAGAACTTGTTGGACATGTAGTTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAG 87912 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 || || |||| ||| ||||||||||| || || ||| ||| | || || | || | Sbjct 87911 ATGCCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACTTTACCGTTGAGT 87852 Query 139951 tttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || ||||| | || ||| ||||||||| |||||||||| Sbjct 87851 TTGAGGAGATACGAACG--CTCGAGGGTCTTGAAGCCAAAGTA 87811 Score = 107 bits (118), Expect = 2e-18 Identities = 316/478 (66%), Gaps = 27/478 (6%) Strand=Plus/Minus Query 138541 TAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTC 138600 || |||||| || | |||||||| | |||||||| ||||| ||||| | || | Sbjct 89258 TAGATGTTGGATGTATAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTCGAG 89199 Query 138601 GCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCC 138660 || || |||||| ||||| ||| | || || | |||||| ||||||| || Sbjct 89198 GCAGTGGGCATGGGCGCCATCAACAAGCTGTTGCGGACACCGTGCTGCTTGATCTTGGCC 89139 Query 138661 TTGA--GCGACGACCAGTCCCACAAATCGCTAGGTTTT---TTGTTCCACATATCGTACT 138715 || | ||| | ||||||||| | ||| || || ||||||||||| ||||||| Sbjct 89138 TTCAAGGCGTC--CCAGTCCCAGAGATCAGAGGGCTTGACATTGTTCCACATGTCGTACT 89081 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCA--AACTCTTG 138773 | | || ||| ||||| || ||||| || ||| ||| ||| |||| Sbjct 89080 GCAGGATACCCTGGGAGACGGGAGATCCCTCGTATGATGAGTAGGGGCCATCAAC-CTTG 89022 Query 138774 CGCCA----ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829 || | || || ||| ||| || | | ||| || || ||| ||||||| Sbjct 89021 -GCAATGTCACACGATGCGGT----GAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCT 88967 Query 138830 GATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889 || ||| || ||||| | |||| | ||||||||||| | ||| || |||| Sbjct 88966 TGTTCAGCTCACGAGCCTCAGGTGACTCGAAAGGCATGCGGAGGGCCAAGAAAGCATCGG 88907 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG--C 138947 |||| || || |||||||| || | ||| || ||||||| || ||| |||||| | Sbjct 88906 CCAGACCCTGGACGCCCACGCCAATAGGACGGTGGCGCA----TGTTGCTCTTGCGGGCC 88851 Query 138948 TTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 | || | |||||| | ||| | ||||||||| ||||| | || || ||||| |||| Sbjct 88850 TCCGGAACAGGATAGTGGTTGATATCGATGATCTTGTTCAGGTTGCGAACGACGACCT 88793 >seq104 Length=128129 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 59883 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 59824 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 59823 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 59764 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| ||||| | | |||| || || ||| Sbjct 59763 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAAC 59704 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | || | ||||| || Sbjct 59703 ATCCAGAAGGAGTCCACGCTCCACCTTGTCCTCCGTCTCCGCGGTGG 59657 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || || | Sbjct 60112 GATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTC 60053 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 60052 TGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 59993 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||| || || || || ||||| |||||| | | | | || || || || Sbjct 59992 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 59933 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||| | || | || |||| || || Sbjct 59932 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGCGG 59885 >seq42 Length=213763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 68052 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 68111 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 68112 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 68171 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | | | || || || ||| Sbjct 68172 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 68231 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 68232 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 68278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892234971120