Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq121 123 2e-23 >seq121 Length=115632 Score = 123 bits (136), Expect = 2e-23 Identities = 271/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 |||||||| ||||| || || |||| | || ||| | | ||||| || |||||| Sbjct 105791 CCGCTGCTCACGACCAAGCGCGTGTTCCACCGGGCGGTGCTGGCCGAGCTCCTCTGGTTC 105850 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 ||| ||| || ||| | | |||| | | ||| || ||||| ||||||| Sbjct 105851 GTGTCGGGCGCGACGTCGTCGCTGCCGCTCAGCGCGCAGGGCGTCAAGATTTGGGACGGC 105910 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCCATCTCGGGAGGAGGGCGACTT 34401 |||| || || | || ||||||| ||| ||| | | || || ||||||||| | Sbjct 105911 AACGGCTCGCGCGCGTTCCTGGACA-GCGTGGGCCTGGCGCACCGCGACGAGGGCGACCT 105969 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG-AAG 34460 ||||| || ||||||||||||||| | ||||| || || ||||| || | ||| | Sbjct 105970 CGGCCCCGTGTACGGGTTCCAGTGGCGGCACTTCGGCGCCGAGTA-CGTCGACGCGCGCG 106028 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 ||||||| | || ||||| | ||||||||| | | || | ||| | | || Sbjct 106029 CGGACTACGCCGGCCAGGGCGTCGACCAGCTGGCGGAGGTCGTGCACAAGCTCCGGACGA 106088 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGG 34580 |||| | ||| | ||||| | || ||||||||||||| ||||| || | |||| Sbjct 106089 ACCCGTACGACCGGCGGATCATCCTGAGCGCGTGGAACCCCAAGGACCTGAAGATCATGG 106148 Query 34581 CGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617 |||| || |||||||||| | ||| || |||||||| Sbjct 106149 CGCTGCCGCCGTGCCACA-TGTTTGCGCAGTTCTACGT 106185 Score = 123 bits (136), Expect = 2e-23 Identities = 271/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 |||||||| || ||| | |||||||||| || |||||||| | || ||||| || Sbjct 106185 ACGTAGAACTGCGCAAACA-TGTGGCACGGCGGCAGCGCCATGATCTTCAGGTCCTTGGG 106127 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||||||||| || | ||||| | ||| | |||||| | | ||| | || Sbjct 106126 GTTCCACGCGCTCAGGATGATCCGCCGGTCGTACGGGTTCGTCCGGAGCTTGTGCACGAC 106067 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCG 6905 | | ||||||||| | ||||| || | |||||||| ||| | || ||||| | Sbjct 106066 CTCCGCCAGCTGGTCGACGCCCTGGCCGGCGTAGTCCGCGCGCGCGTCGACG-TACTCGG 106008 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | || ||||| | ||||||||||||||| || ||||| | ||||||||| || || | Sbjct 106007 CGCCGAAGTGCCGCCACTGGAACCCGTACACGGGGCCGAGGTCGCCCTCGTCGCGGTGCG 105948 Query 6966 GGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||| ||| ||||||| || | || || |||| ||||||| ||||| || ||| Sbjct 105947 CCAGGCCCACGC-TGTCCAGGAACGCGCGCGAGCCGTTGCCGTCCCAAATCTTGACGCCC 105889 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | | |||| | | ||| || ||| ||||||||| || ||||| | | | Sbjct 105888 TGCGCGCTGAGCGGCAGCGACGACGTCGCGCCCGACACGAACCAGAGGAGCTCGGCCAGC 105829 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 || || | |||| || || ||||| |||||||| Sbjct 105828 ACCGCCCGGTGGAACACGCGCTTGGTCGTGAGCAGCGG 105791 Score = 104 bits (114), Expect = 2e-17 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 34620 CGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGC 34679 |||| || | ||| ||||||||| || || || || | |||||||| | || |||| Sbjct 106281 CGAAGGGCCACCTGCACTGCCAGCTGTACCAGCGGTCCTGCGACATGGGCCTCGGCGTGC 106340 Query 34680 CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGG 34739 |||||||||| || || ||||| ||||| ||| |||||||||| || || ||| | Sbjct 106341 CGTTCAACATCGCCAGCTACGCGCTGCTGACGCACATGATCGCGCACGT-GTGCGACCTC 106399 Query 34740 TTCCTGGGGAG-CTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCG 34796 ||| ||| || ||| || |||| |||| || ||||| ||||| || ||||| | | Sbjct 106400 GTCCCGGGCAGCCTGACGC--ACGTCATGGGCGACGCGCACGTCTACGTGGACCACGTGG 106457 Query 34797 AGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 | ||| ||| |||||| | || ||||| || |||||| |||| Sbjct 106458 ACGCGCTGAGGACGCAGCTGGAGCGGGAGCCGCGCGAGTTCCCGGAGCT 106506 Score = 104 bits (114), Expect = 2e-17 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| |||||| || ||||| || | |||||| ||| ||| || | ||||| | Sbjct 106506 AGCTCCGGGAACTCGCGCGGCTCCCGCTCCAGCTGCGTCCTCAGCGCGTCCACGTGGTCC 106447 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACG 6616 | ||||| ||||| || |||| |||| || ||| || ||| ||| | ||| Sbjct 106446 ACGTAGACGTGCGCGTCGCCCATGACGT--GCGTCAGGCTGCCCGGGACGAGGTCGCAC- 106390 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || |||||||||| ||| ||||| ||||| || || |||||||||||||| || | Sbjct 106389 ACGTGCGCGATCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGG 106330 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||||||| | || || || || ||||||||| ||| | || |||| Sbjct 106329 CCCATGTCGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTCG 106281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257054470880