Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq42 176 1e-38 seq104 172 1e-37 seq8 134 3e-26 seq50 102 2e-16 >seq42 Length=213763 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 68263 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 68204 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || |||| || ||||||||| Sbjct 68203 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 68144 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 68143 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 68084 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 68083 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 68052 >seq104 Length=128129 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | ||||| | ||||| Sbjct 59900 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 59959 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || ||||| || ||||| ||||| | || ||||||||| Sbjct 59960 TCGAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 60019 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||||||| || ||||| |||||||| ||| Sbjct 60020 TGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 60079 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 60080 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTT 60114 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | || || | || || Sbjct 59672 AGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 59731 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || || || ||||| | || ||||||||| Sbjct 59732 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 59791 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 59792 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTC 59851 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 59852 TTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 59883 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || || ||||| || || | || |||| || ||| Sbjct 59444 AGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGACAGCGTCCGGCCGTCT 59503 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||||||||| || || ||||| || |||| || |||||||| Sbjct 59504 TCCAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 59563 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| || || || ||| |||||||| ||||||||| Sbjct 59564 TGAATCTTGGCCTTCACGTTGTCGATCGTATCCGATGATTCCACCTCGAGGGTGATCGTC 59623 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | ||||| Sbjct 59624 TTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 59655 >seq8 Length=406722 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| || ||||||||||| |||||||| Sbjct 173809 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 173750 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || ||||| || ||||| | || ||||||||||||||||| || ||||| ||| Sbjct 173749 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 173690 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 173689 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 173631 >seq50 Length=202051 Score = 102 bits (112), Expect = 2e-16 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGC---ATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | | |||| ||| |||||| |||||||| Sbjct 88640 CCAAGGTTCTTCTGGTTGCTCTTGCGGT---TGGCGTGATCCTTGTACAACATGAAGGGG 88584 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | ||||||| |||| ||| || ||| |||| ||| || | ||| Sbjct 88583 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGCGCCTTCAGGGTC 88524 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 |||| | | || || ||||||||| | ||| || ||||||| ||| || ||| Sbjct 88523 TTTTGGCCGCGACCCTCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAG 88464 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || | || ||||| ||| |||||||| | ||| |||| | |||| | || Sbjct 88463 CAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCT 88404 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360 || || ||||||||||| || | | |||||| |||| Sbjct 88403 ACACGCTTCATGAAGAGATCCGGGATCCAGAGGGCA 88368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159137831540210