Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14] 954 sequences; 42,624,563 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq104 165 2e-35 seq8 147 5e-30 seq42 132 1e-25 seq50 98.7 2e-15 >seq104 Length=128129 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || || || ||||||||||||||||| || ||| Sbjct 59880 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGAC 59821 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || || ||||||||||| ||||| Sbjct 59820 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAGCAG 59761 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || || || | ||||| |||| || ||| || Sbjct 59760 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAACATC 59701 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 59700 CAGAAGGAGTCCACGCTCCACCTTGT 59675 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || ||||||||||||||||||||| || || Sbjct 59652 CAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCGGAT 59593 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| ||||| || || || || || |||||||| Sbjct 59592 ACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 59533 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| ||||| || |||| || | || || ||| | Sbjct 59532 CGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAACATT 59473 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 59472 CAGAAGGAGTCGACGCTGCA-CTTG 59449 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| || ||| ||| Sbjct 60108 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGAC 60049 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 60048 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 59989 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | || || |||| || ||| || Sbjct 59988 CGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 59929 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 59928 CAGAAGGAGTCGACGCTCCACCTCGT 59903 >seq8 Length=406722 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || |||||||| |||||||| || ||||||||| Sbjct 173631 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 173690 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || ||||||||||| || || ||| | Sbjct 173691 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATTG 173750 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || ||||| || ||||| | |||||| |||| || ||| |||| || Sbjct 173751 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 173809 >seq42 Length=213763 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 68055 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 68114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || || || ||||| || Sbjct 68115 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAACAG 68174 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || |||| || ||| || Sbjct 68175 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATC 68234 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 68235 CAGAAGGAGTCCACCCTGCACCTGGT 68260 >seq50 Length=202051 Score = 98.7 bits (108), Expect = 2e-15 Identities = 185/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGC---ATCTTTGTATGCGATGAAAGGC 214179 |||| ||| ||||||||||| |||||| |||| ||| ||||| ||||| || Sbjct 88640 CCAAGGTTCTTCTGGTTGCTCTTGCGGT---TGGCGTGATCCTTGTACAACATGAAGGGG 88584 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239 | || |||| |||||| | || ||| || |||||| | || ||||||| | | Sbjct 88583 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGCGCCTTCAGGGTC 88524 Query 214240 TTTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAG 214299 |||| | | | |||||| |||||||| || || |||| ||| || ||| |||||| Sbjct 88523 TTTTGGCCGCGACCCTCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAG 88464 Query 214300 ACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTG 214359 || |||| ||||| |||||||||||| | ||| |||| | || || | | Sbjct 88463 CAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCT 88404 Query 214360 ACTCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390 || | |||||||| || || | |||||| Sbjct 88403 ACACGCTTCATGAAGAGATCCGGGATCCAGA 88373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716486643076