Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysoporthe_20cubensis_20[genbank_20GCA_5F001282315.1_202015-09-14]
954 sequences; 42,624,563 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq104 165 2e-35
seq8 147 5e-30
seq42 132 1e-25
seq50 98.7 2e-15
>seq104
Length=128129
Score = 165 bits (182), Expect = 2e-35
Identities = 160/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || |||||||| || || || ||||||||||||||||| || |||
Sbjct 59880 CAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCGAC 59821
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| |||||||| || || ||||||||||| |||||
Sbjct 59820 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAGCAG 59761
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| ||||| || || || | ||||| |||| || ||| ||
Sbjct 59760 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAACATC 59701
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 59700 CAGAAGGAGTCCACGCTCCACCTTGT 59675
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || || || ||||||||||||||||||||| || ||
Sbjct 59652 CAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCGGAT 59593
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||| ||||| || || || || || ||||||||
Sbjct 59592 ACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 59533
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||||| ||||| || |||| || | || || ||| |
Sbjct 59532 CGTCTTATCTTCGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAACATT 59473
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || ||||| ||||
Sbjct 59472 CAGAAGGAGTCGACGCTGCA-CTTG 59449
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || ||||| || ||| |||
Sbjct 60108 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGAC 60049
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || |||||||||||||||||
Sbjct 60048 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 59989
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || |||||||| ||||| | || || |||| || ||| ||
Sbjct 59988 CGCCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 59929
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 59928 CAGAAGGAGTCGACGCTCCACCTCGT 59903
>seq8
Length=406722
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
|||||||| || || || || || || |||||||| |||||||| || |||||||||
Sbjct 173631 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 173690
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| |||||||| ||||| |||||||| || || ||||||||||| || || ||| |
Sbjct 173691 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATTG 173750
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || ||||| || ||||| | |||||| |||| || ||| |||| ||
Sbjct 173751 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 173809
>seq42
Length=213763
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 68055 CAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 68114
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || || ||||| ||
Sbjct 68115 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAACAG 68174
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | || || |||| || ||| ||
Sbjct 68175 CGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATC 68234
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| || ||
Sbjct 68235 CAGAAGGAGTCCACCCTGCACCTGGT 68260
>seq50
Length=202051
Score = 98.7 bits (108), Expect = 2e-15
Identities = 185/271 (68%), Gaps = 6/271 (2%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGC---ATCTTTGTATGCGATGAAAGGC 214179
|||| ||| ||||||||||| |||||| |||| ||| ||||| ||||| ||
Sbjct 88640 CCAAGGTTCTTCTGGTTGCTCTTGCGGT---TGGCGTGATCCTTGTACAACATGAAGGGG 88584
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239
| || |||| |||||| | || ||| || |||||| | || ||||||| | |
Sbjct 88583 TTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTGCGCCTTCAGGGTC 88524
Query 214240 TTTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAG 214299
|||| | | | |||||| |||||||| || || |||| ||| || ||| ||||||
Sbjct 88523 TTTTGGCCGCGACCCTCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAG 88464
Query 214300 ACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTG 214359
|| |||| ||||| |||||||||||| | ||| |||| | || || | |
Sbjct 88463 CAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCT 88404
Query 214360 ACTCTTTTCATGAAAAGGTCGGAAGTCCAGA 214390
|| | |||||||| || || | ||||||
Sbjct 88403 ACACGCTTCATGAAGAGATCCGGGATCCAGA 88373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203716486643076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |