Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17 145 9e-30 seq1610 113 5e-20 >seq17 Length=201905 Score = 145 bits (160), Expect = 9e-30 Identities = 382/578 (66%), Gaps = 14/578 (2%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||||| | ||| || |||| | || ||| || ||||| |||||||| || ||| Sbjct 88191 GGGCACATCAGAGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCCGGGATC 88132 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || | || || || | | | || || ||||| ||||| || Sbjct 88131 CAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTCCGCAGG 88072 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | ||||| ||||| || |||| ||| |||| | | | || || Sbjct 88071 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCGGGG 88012 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || || || || |||||||| | ||||| || ||||| || | || | |||||| || Sbjct 88011 CGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGCAACATAGGG 87952 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 || || |||||||| | || ||||| || | ||| ||| || ||||||| || Sbjct 87951 ATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTGGCACGGATGCGG 87892 Query 54296 CTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | |||| |||| || || || ||||| || ||||| | || || || | | Sbjct 87891 TGGACGTTGA--GACCAATGCCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTCAGGG 87834 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 |||||||||||||||| || || || ||| |||||| || || || || |||| | Sbjct 87833 TATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGACAACT 87774 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 | || || || ||||| || | || || || ||||| || || | || | | Sbjct 87773 GCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTGAAGAACTTGTTGG 87714 Query 54474 A-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT----CCCATTGATGAATTCCTAC 54528 | | |||| ||||| ||||| | | | || || | ||| |||| || || Sbjct 87713 ACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAGATG----CCAAC 87659 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 ||||||||||| | ||||||||| || | || |||| Sbjct 87658 AGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 87621 >seq1610 Length=70883 Score = 113 bits (124), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| ||| || ||||| || ||| ||||||||||| | | || | ||||||||| Sbjct 62189 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 62130 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| || |||||||| || ||||| || ||||| || || | ||| Sbjct 62129 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 62070 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCG 24302 |||||||| ||||| || || ||||| |||| ||| | | | || | | Sbjct 62069 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 62010 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 | ||| || |||||| | ||||||| ||||||||||| Sbjct 62009 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 61972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702497007520