Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17 138 1e-27 seq1610 122 1e-22 >seq17 Length=201905 Score = 138 bits (152), Expect = 1e-27 Identities = 374/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | ||| || |||| | || ||| || ||||| |||||||| || ||| Sbjct 88191 GGGCACATCAGAGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCCGGGATC 88132 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || || || | | | || || ||||| ||||| || Sbjct 88131 CAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTCCGCAGG 88072 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||||| ||||| || |||| ||| ||||| | | | || || Sbjct 88071 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCGGGG 88012 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || || || || |||||||| | ||||| || ||||| || | || | |||||| || Sbjct 88011 CGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGCAACATAGGG 87952 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 || || || || || | || ||||| || | ||| ||| || ||||||| || Sbjct 87951 ATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTGGCACGGATGCGG 87892 Query 63534 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | |||| |||| || || || ||||| || ||||| | || || || | | Sbjct 87891 TGGACGTTGA--GACCAATGCCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTCAGGG 87834 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | ||||||||||| || ||||| || || |||||| || || || || |||| | Sbjct 87833 TATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGACAACT 87774 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | ||| || || ||||| || | || || || ||||| || || | || | | Sbjct 87773 GCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTGAAGAACTTGTTGG 87714 Query 63712 A-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT----CCCATTGATGAATTCCTAC 63766 | | |||| ||||| ||||||| | | || || | ||| |||| || || Sbjct 87713 ACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAGATG----CCAAC 87659 Query 63767 TGCGACACGCATTAACATGTGCTGAGG 63793 ||||||||||| | ||||||||| || Sbjct 87658 AGCGACACGCATCAGCATGTGCTGTGG 87632 >seq1610 Length=70883 Score = 122 bits (134), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| || ||||| || ||||||||||||||| | | || | |||||| || Sbjct 62189 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 62130 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| || ||||| || ||||||||||| | || Sbjct 62129 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 62070 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 33749 ||||| || ||||| || |||||||| |||| ||| | || | || | | Sbjct 62069 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 62010 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | ||| || |||||| | ||||||| ||||||||||| Sbjct 62009 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 61972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797335618720