Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17 156 6e-33 seq1610 127 3e-24 >seq17 Length=201905 Score = 156 bits (172), Expect = 6e-33 Identities = 350/522 (67%), Gaps = 8/522 (2%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| |||||||| || || || ||| | ||| ||||| |||| || Sbjct 87983 CGATACGTCGATCAGGGTGGCAATAAGCGCCCCGGTGCTTTTGCCATCTACCTGGAGCCA 88042 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || |||| |||| || ||| || ||||||| Sbjct 88043 TGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGAAAGGAAGAGGTC 88102 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || ||| |||||| | || ||| | ||||||||||| || | Sbjct 88103 CGTGCTCGTGACCTCTTCCTTGCCCTCTGGATCCCGGATCTCTTCATGAAGCGTGTGGAG 88162 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| |||||| || ||||||||| || || ||||| || |||| |||| Sbjct 88163 AAGAACGGCGACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTAC 88222 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 ||||| ||||| ||||| |||| | ||||||| ||||| || || | | | Sbjct 88223 GGCGAGGAGTTCGAGGCTCTGTACGAGAAGTACGAGCGCGAGGGTCG---CG-GCCAAAA 88278 Query 97164 GTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | | |||| || ||| | |||||| | |||||| ||||| || | Sbjct 88279 GACCCTGAAGGCGCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 88338 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| | ||||||||| || || ||||| |||||||| || | ||||| Sbjct 88339 CCCCTTCATGTTGTACAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 88398 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 ||| ||||||| || ||||| || || | ||||| | |||| |||||| || Sbjct 88399 CATTCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGC 88458 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || ||| ||||| || || ||||| |||| || || Sbjct 88459 TGTCTGCAACCTGGCGTCTATCGCCCTGCCACAGTTCGTCGA 88500 >seq1610 Length=70883 Score = 127 bits (140), Expect = 3e-24 Identities = 195/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||| |||| ||||| ||||| | || ||| | || ||| Sbjct 61567 ATTTGGCAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCTGAGGAGATTGACCTG 61626 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||||| |||| ||| | | |||||||| || ||| | | || || || Sbjct 61627 TCTAAGGACCTGCACGACTGGAACAACCGTTTGACCGATGACGAGAAATACTTCATCTCC 61686 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | ||||||||||||| || || || ||||| ||||| || || | || Sbjct 61687 CACATCCTCGCCTTCTTTGCCGCTTCGGACGGCATCGTTAACGAAAACTTGATCGAGCGC 61746 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| | ||| | ||||| |||| || || ||||| ||||| | |||||| Sbjct 61747 TTCAGTGCTGAGGTCCAGATTCCTGAGGCCCGTTGTTTCTACGGCTTCCAGACCATGATG 61806 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| | ||||| || | |||||| |||||||| Sbjct 61807 GAGAACATCCACTCCGAGACTTACTCTCTCCTGATTGA 61844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035356420240