Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016
-01-13] 2,574 sequences; 43,968,379 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq17 156 6e-33
seq1610 127 3e-24
>seq17
Length=201905
Score = 156 bits (172), Expect = 6e-33
Identities = 350/522 (67%), Gaps = 8/522 (2%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| ||||| |||||||| || || || ||| | ||| ||||| |||| ||
Sbjct 87983 CGATACGTCGATCAGGGTGGCAATAAGCGCCCCGGTGCTTTTGCCATCTACCTGGAGCCA 88042
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || || |||| |||| || ||| || |||||||
Sbjct 88043 TGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGAAAGGAAGAGGTC 88102
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | ||| | || ||| |||||| | || ||| | ||||||||||| || |
Sbjct 88103 CGTGCTCGTGACCTCTTCCTTGCCCTCTGGATCCCGGATCTCTTCATGAAGCGTGTGGAG 88162
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| ||| |||||| || ||||||||| || || ||||| || |||| ||||
Sbjct 88163 AAGAACGGCGACTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGACTGCTAC 88222
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163
||||| ||||| ||||| |||| | ||||||| ||||| || || | | |
Sbjct 88223 GGCGAGGAGTTCGAGGCTCTGTACGAGAAGTACGAGCGCGAGGGTCG---CG-GCCAAAA 88278
Query 97164 GTCGATGCACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219
| | || | | |||| || ||| | |||||| | |||||| ||||| || |
Sbjct 88279 GACCCTGAAGGCGCAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAA 88338
Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279
|| | ||| | ||||||||| || || ||||| |||||||| || | |||||
Sbjct 88339 CCCCTTCATGTTGTACAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 88398
Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339
||| ||||||| || ||||| || || | ||||| | |||| |||||| ||
Sbjct 88399 CATTCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGC 88458
Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381
|| ||| ||||| || || ||||| |||| || ||
Sbjct 88459 TGTCTGCAACCTGGCGTCTATCGCCCTGCCACAGTTCGTCGA 88500
>seq1610
Length=70883
Score = 127 bits (140), Expect = 3e-24
Identities = 195/278 (70%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||| |||| ||||| ||||| | || ||| | || |||
Sbjct 61567 ATTTGGCAAATGTACAAGAAGCACGAGGCGTCCTTCTGGACCGCTGAGGAGATTGACCTG 61626
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||||||| |||| ||| | | |||||||| || ||| | | || || ||
Sbjct 61627 TCTAAGGACCTGCACGACTGGAACAACCGTTTGACCGATGACGAGAAATACTTCATCTCC 61686
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | ||||||||||||| || || || ||||| ||||| || || | ||
Sbjct 61687 CACATCCTCGCCTTCTTTGCCGCTTCGGACGGCATCGTTAACGAAAACTTGATCGAGCGC 61746
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| | ||| | ||||| |||| || || ||||| ||||| | ||||||
Sbjct 61747 TTCAGTGCTGAGGTCCAGATTCCTGAGGCCCGTTGTTTCTACGGCTTCCAGACCATGATG 61806
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296
|||||| | ||||| || | |||||| ||||||||
Sbjct 61807 GAGAACATCCACTCCGAGACTTACTCTCTCCTGATTGA 61844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741035356420240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |