Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17 136 5e-27 seq1610 134 2e-26 >seq17 Length=201905 Score = 136 bits (150), Expect = 5e-27 Identities = 380/578 (66%), Gaps = 14/578 (2%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||||| | ||| || |||| | || ||| || ||||| |||||||| || ||| Sbjct 88191 GGGCACATCAGAGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCCGGGATC 88132 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || | || || || | | | || || ||||| ||||| || Sbjct 88131 CAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTCCGCAGG 88072 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 ||||||||| | | | ||||| ||||| || |||| ||| ||||| | | | || || Sbjct 88071 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCGGGG 88012 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || || || || |||||||| | ||||| || ||||| || | || | |||||| || Sbjct 88011 CGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACACGCAACATAGGG 87952 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 || || || || || | || ||||| || | ||| ||| || ||||||| || Sbjct 87951 ATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTGGCACGGATGCGG 87892 Query 63483 CTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | |||| |||| || || || ||||| || ||||| | || || || | | Sbjct 87891 TGGACGTTGA--GACCAATGCCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTCAGGG 87834 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600 | |||||||| ||||| ||||| || || |||||| || || || || |||| | Sbjct 87833 TATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAGCACGACGACAACT 87774 Query 63601 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63660 | || || || ||||| || | || || || ||||| || || | || | | Sbjct 87773 GCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTGAAGAACTTGTTGG 87714 Query 63661 AAA-GTAGATTGTACGTCTCAATAGCTGAGTCTATAT----CCCATTGATGAATTCCTAC 63715 | | |||| ||||| ||||||| | | || || | ||| |||| || || Sbjct 87713 ACATGTAG-TTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAGATG----CCAAC 87659 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63753 ||||||||||| | ||||||||| || | || |||| Sbjct 87658 AGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGA 87621 >seq1610 Length=70883 Score = 134 bits (148), Expect = 2e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| ||| || ||||| || ||||||||||||||| | | || ||||||||||| Sbjct 62189 AACAGCAAGCAGGCGAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGTTCGTTGGAG 62130 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| || ||||| || ||||||||||| | ||| Sbjct 62129 AAGGTCAGGCCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAAGCGCCA 62070 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 33471 ||||| || ||||| || |||||||| |||| ||| | || | || | | Sbjct 62069 CTGAAGAAAATACCTTCGACAGCAGCAAATGCAACAAGGCGCTGAGCGTAGGTAGACTCA 62010 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 | ||| || |||||| | ||||||| ||||||||||| Sbjct 62009 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 61972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927156673840