Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1883 100 2e-16 seq5 93.3 3e-14 >seq1883 Length=75506 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| |||||||| |||||||| || ||||||||||| | Sbjct 35177 CCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCAGA 35236 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||| |||| || ||||||||| | ||||| ||||| ||||| || Sbjct 35237 CAGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCAAAGATAAGACGCTGCTGGTCTGGGGG 35296 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | |||||| | | | | ||||| | ||| Sbjct 35297 AATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCGATCGTGTCCGATGATTCCAC 35356 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || ||||| || ||||| || || ||||| Sbjct 35357 CTCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 35404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| |||||||| || ||||||||||||| | ||| | | ||||| | || Sbjct 35658 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 35717 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || |||| || ||||| |||||| ||| | |||||| ||||| || || Sbjct 35718 TTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 35777 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || ||| || | |||||||| || |||| Sbjct 35778 GC--CTTGACATTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGG 35835 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || |||||||| ||| Sbjct 35836 TGAGGGTCTTGACGAAGATCTGCATCTTG 35864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || ||||||||||||| || || | ||||||| | || Sbjct 35430 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCAAGCTGC 35489 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| || ||| ||| | ||||| ||||| || || Sbjct 35490 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTG 35549 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | |||| || | |||||| || || |||| Sbjct 35550 GC--CTTCACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGG 35607 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 35608 TGAGAGTCTTGACGAAGATCTGCAT 35632 >seq5 Length=272196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||| ||||||| Sbjct 174135 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 174194 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| || | || || ||||||||||| || Sbjct 174195 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGGGGA 174254 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | |||| Sbjct 174255 ATACCCTCCTTGTCCTGGATCTTGGC--CTTGACATTGTCGATGGTGTCGGAAGACTCCA 174312 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || || ||||| || |||||||| Sbjct 174313 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 174361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075292136260