Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1883 118 9e-22 seq5 118 9e-22 seq9 107 2e-18 >seq1883 Length=75506 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | ||||| || || |||||||||| || || || Sbjct 35863 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 35804 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || || ||||||||||| || || || || Sbjct 35803 TCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGAC 35744 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | |||||| ||||||| ||||||| ||| Sbjct 35743 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 35684 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 35683 AACATCCAGAAGGAGTCGAC 35664 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| |||| || || |||||| | | Sbjct 35404 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACGATCACCCTCGAGGTGGAATCATCG 35345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||||||||||||||||||||| || || || Sbjct 35344 GACACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 35285 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | || || ||| || | || || |||||| Sbjct 35284 CAGCGTCTTATCTTTGCGGGCAAGCAGCTGGAAGACGGCCGGACGCTGTCTGACTACAAC 35225 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| |||| || || Sbjct 35224 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 35178 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || ||| |||| || || ||||| | || Sbjct 35632 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCC 35573 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || |||||||||||||| || || ||||| Sbjct 35572 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 35513 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| |||||| | ||||| |||||| Sbjct 35512 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAAC 35453 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 35452 ATCCAGAAGGAGTCCAC 35436 >seq5 Length=272196 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 174361 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 174302 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||||||||| || || ||| Sbjct 174301 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 174242 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| ||| ||||||| || ||| Sbjct 174241 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTATAAC 174182 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || |||| |||| || ||| Sbjct 174181 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGT 174134 >seq9 Length=228969 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || ||| | || ||||| || |||| ||||| ||||| | |||| ||| | Sbjct 118475 TTCGTGAAGACTCTGACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATC 118416 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| | |||| || || || |||||||||||||| || || |||||||| || | Sbjct 118415 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAACAGCGATTG 118356 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| |||||| | ||||| |||||||| || || Sbjct 118355 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAA 118297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714832870310