Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1883 167 6e-36 seq5 125 2e-23 seq9 107 5e-18 seq1610 100 7e-16 >seq1883 Length=75506 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | |||| || || ||||| || ||||||| Sbjct 35406 CCACCGCGGAGACGGAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 35465 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||| |||||||| ||| ||| Sbjct 35466 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 35525 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | ||| ||| || || Sbjct 35526 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGACGACTCCACC 35585 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct 35586 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 35632 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||||| || |||||||| | || || || || ||| Sbjct 35214 TCCTTCTGAATGTTGTAGTCAGACAGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCAAAG 35273 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| || || || || || || || || || |||||| Sbjct 35274 ATAAGACGCTGCTGG---TCTGGGGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACG 35330 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||||| || ||||| ||||||||||| || ||||| |||||| Sbjct 35331 TTGTCGATCGTGTCCGATGATTCCACCTCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTG 35390 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 35391 ACGAAGATTTGCAT 35404 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||| || || ||||| || ||||||| ||| ||||| || || Sbjct 35649 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 35708 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||| ||||| ||||| || ||||| || || || ||| Sbjct 35709 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 35768 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || || || || | || || || || || || ||||| ||| Sbjct 35769 TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTC 35828 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||||||||| |||||||| Sbjct 35829 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 35860 >seq5 Length=272196 Score = 125 bits (138), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| |||||||||| | Sbjct 174135 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 174194 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||| |||||||| |||||| Sbjct 174195 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTG---GTCTGGG 174251 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | ||| || || Sbjct 174252 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 174311 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 174312 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 174365 >seq9 Length=228969 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||||||| Sbjct 118297 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 118356 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||||||| ||||| || || || |||||||| || || || ||||| || Sbjct 118357 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 118416 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || ||||||||||| ||||| Sbjct 118417 ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTCAGAGTCTTCACGAA 118475 >seq1610 Length=70883 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||||||| | | ||||| || || ||||||||||| || || ||| || || Sbjct 62297 TCGGCATGAATGCCAACTTGATGAAGCAGTACATCGAATTCGTCGCCGACCGTCTCCTCG 62356 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 || ||||| | ||||| | ||||| || | || || |||| ||| ||||| | Sbjct 62357 TCGCTCTCGGCAACGAGAAGATCTACAAGTCTACTAACCCTTTCGACTTCATGGAGAACA 62416 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTG 269332 | || || | || ||||| ||||||||||| |||||||| | ||||| || ||| Sbjct 62417 TCTCCCTTGGCGGGAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCTG 62476 Query 269333 GTGTAATG 269340 |||| ||| Sbjct 62477 GTGTCATG 62484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615495735172