Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1883 125 7e-24 seq9 102 8e-17 seq5 93.3 4e-14 >seq1883 Length=75506 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | || | ||| ||||| || || || ||||| ||| | Sbjct 35406 CCACCGCGGAGACGGAGGACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 35465 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||| | ||||||||||| ||||| Sbjct 35466 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 35525 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| |||| |||||| | ||| || Sbjct 35526 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG-TCGATGGTGTCGGACGACTCCAC 35584 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| |||||||| ||||| || || || |||||||| Sbjct 35585 CTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 35632 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 35663 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCC 35722 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 35723 AGCGAAAATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 35782 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | |||||| | |||||| || | || | || |||||||| || || Sbjct 35783 GACATTGTCAATGGTGTCAGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 35842 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 35843 CTTGACGAAGATCTGCAT 35860 Score = 102 bits (112), Expect = 8e-17 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| || | |||| |||||| || | ||| ||||| || ||||| ||||| Sbjct 35172 TACTGC-CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 35230 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || || ||| || || || ||||| || || || |||| | |||||||| || Sbjct 35231 GTCAGACAGCGTCCGGCCGTCTTCCAGCTGCTTGCCCGCAAAGATAAGACGCTGCTGGTC 35290 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || ||||||||||| || || ||| | |||| |||| ||||||| Sbjct 35291 TGGGGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTG-TCGATCGTGTCCGATG 35349 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| ||| | ||| ||||| ||||| || || || || || ||||| Sbjct 35350 ATTCCACCTCGAGGGTGATCGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 35404 >seq9 Length=228969 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 118297 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 118356 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||| ||||| ||||| || |||||||||||| ||| || ||||| |||| || Sbjct 118357 AATCGCTGTTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TC 118415 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | | ||| || || | ||| | || || || |||||||| || || || Sbjct 118416 GATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTCAGAGTCTTCACGAA 118475 >seq5 Length=272196 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | || ||||| || || || || || ||| Sbjct 174132 GCACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCG 174191 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || || ||||| || |||||| |||||| ||||| || || || Sbjct 174192 GAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCTGGG 174251 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 174252 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 174311 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || ||||| || || || || || || ||||||||| Sbjct 174312 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 174362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485500761760