Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1610 105 2e-17 seq17 102 2e-16 seq1606 93.3 1e-13 >seq1610 Length=70883 Score = 105 bits (116), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || ||||| | ||||||||| | | |||||||||||| ||| || Sbjct 61958 TTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGAC---CGT--GA 62012 Query 133497 GTTTTGCTAC-----TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGG 133551 || | |||| || || ||||| ||||||| || || || ||||| |||||||| Sbjct 62013 GTCTACCTACGCTCAGCGCCTTGTTGCATTTGCTGCTGTCGAAGGTATTTTCTTCAGTGG 62072 Query 133552 TGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 || ||| || || || ||||| || ||||||||| | | ||||| ||| || || Sbjct 62073 CGCTTTCGCTTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTC 62132 Query 133612 TAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||||||| || || | ||||||| || ||||| || || ||| Sbjct 62133 CAACGAACTCATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCC 62178 >seq17 Length=201905 Score = 102 bits (112), Expect = 2e-16 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||| |||||||| || || | ||| || | ||||| || ||||||||| || Sbjct 88089 CCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAG 88030 Query 156039 ATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || |||||| ||| | ||| |||||||||||| || || || ||||| || ||| Sbjct 88029 ATGGCAAAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTG 87970 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146 ||||||| | |||||| || || |||||||| ||||| ||||| || |||| Sbjct 87969 AAGACACGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGA 87918 >seq1606 Length=244132 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| |||| ||||||||||||||| |||||||| |||||||| | |||||||| | Sbjct 54494 TGCACCATGTGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAAGCCACCATCTCT 54435 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 ||| | ||||||| | || ||||| || | | || || || || ||| ||| Sbjct 54434 AGCACGACCCTCGACGGGTTGACGCGTCATGATCTGCACTGGGCCACGGGCGCGCGCATG 54375 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||| |||| ||||| || ||||||||| ||| | | || |||| ||| Sbjct 54374 GATCTTGTCATCCACCATGTGACGGAGACGCTGATAGTACGTCGGGCCGAAGAA 54321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471769060375438