Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysoporthe_20deuterocubensis_20[genbank_20GCA_5F001513825.1_202016 -01-13] 2,574 sequences; 43,968,379 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 143 2e-29 seq1883 98.7 9e-16 seq5 98.7 9e-16 >seq17 Length=201905 Score = 143 bits (158), Expect = 2e-29 Identities = 457/703 (65%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 |||||||||||||| ||||| || | ||||| || |||||| ||| | ||| || Sbjct 88263 TCGCGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAGCAGTCGGCAAGGCCG 88204 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || || ||||| || | ||| |||||||| || || ||| ||||||| Sbjct 88203 GGGCACTCGTTGGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAG 88144 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 |||||||| ||||| | || | | | || || || |||||| || | Sbjct 88143 AGATCCGGGATCCAGAGGGCAAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGG 88084 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || || || ||||| || || || |||||||||||||| ||||| |||||||| Sbjct 88083 TTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCA 88024 Query 139537 ATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | || || || |||||||| |||||||||| ||| ||| || ||||| || Sbjct 88023 AAAGCACCGGGGCGCTTATTGCCACCCTGATCGACGTATCGGGCAGTGTTGTTGAAGACA 87964 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTG 139650 |||||||| || | || | | || |||||||||| | |||| ||| | | || Sbjct 87963 CGCAACATAGGGATGATGCCATTGGACGTGCCGTTGGTGCCAGCGATGTAGGAGCCGGTG 87904 Query 139651 CGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACG 139710 || |||| | || || |||| || || || || | | ||||| || | | Sbjct 87903 ---GCACGGATGCGGTGGACGTTGAGACCAATGCCTCCAGCCATCTTGGAGATCATGGCA 87847 Query 139711 CAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 || | || || || || || |||||||| |||| ||| || || ||| Sbjct 87846 CAGGTCTTCAGGGTATCATAGATGCCCTCAATGCTGTCCTCCTTCATGTCAACGAGGAAG 87787 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || ||||| | |||| | ||||||||| ||||| || || |||||| ||| Sbjct 87786 CACGACGACAACTGCGCCTGAGGCGTGCCGGCATTGAACAGCGTTGGCGACGCGTGTGTG 87727 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | || ||||| | | ||| || || | | ||| | || | || | Sbjct 87726 AAGAACTTGTTGGACATGTAGTTGTAGGTCTCAAGAACCCTCTCGATGTTGTCCCCCCAG 87667 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 || || |||| ||| ||||||||||| || || ||| ||| | || || | || | Sbjct 87666 ATGCCAACAGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACTTTACCGTTGAGT 87607 Query 139951 tttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || ||||| | || ||| ||||||||| |||||||||| Sbjct 87606 TTGAGGAGATACGAACG--CTCGAGGGTCTTGAAGCCAAAGTA 87566 Score = 107 bits (118), Expect = 2e-18 Identities = 316/478 (66%), Gaps = 27/478 (6%) Strand=Plus/Minus Query 138541 TAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTC 138600 || |||||| || | |||||||| | |||||||| ||||| ||||| | || | Sbjct 89013 TAGATGTTGGATGTATAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTCGAG 88954 Query 138601 GCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCC 138660 || || |||||| ||||| ||| | || || | |||||| ||||||| || Sbjct 88953 GCAGTGGGCATGGGCGCCATCAACAAGCTGTTGCGGACACCGTGCTGCTTGATCTTGGCC 88894 Query 138661 TTGA--GCGACGACCAGTCCCACAAATCGCTAGGTTTT---TTGTTCCACATATCGTACT 138715 || | ||| | ||||||||| | ||| || || ||||||||||| ||||||| Sbjct 88893 TTCAAGGCGTC--CCAGTCCCAGAGATCAGAGGGCTTGACATTGTTCCACATGTCGTACT 88836 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCA--AACTCTTG 138773 | | || ||| ||||| || ||||| || ||| ||| ||| |||| Sbjct 88835 GCAGGATACCCTGGGAGACGGGAGATCCCTCGTATGATGAGTAGGGGCCATCAAC-CTTG 88777 Query 138774 CGCCA----ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829 || | || || ||| ||| || | | ||| || || ||| ||||||| Sbjct 88776 -GCAATGTCACACGATGCGGT----GAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGCT 88722 Query 138830 GATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889 || ||| || ||||| | |||| | ||||||||||| | ||| || |||| Sbjct 88721 TGTTCAGCTCACGAGCCTCAGGTGACTCGAAAGGCATGCGGAGGGCCAAGAAAGCATCGG 88662 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG--C 138947 |||| || || |||||||| || | ||| || ||||||| || ||| |||||| | Sbjct 88661 CCAGACCCTGGACGCCCACGCCAATAGGACGGTGGCGCA----TGTTGCTCTTGCGGGCC 88606 Query 138948 TTCG--ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 | || | |||||| | ||| | ||||||||| ||||| | || || ||||| |||| Sbjct 88605 TCCGGAACAGGATAGTGGTTGATATCGATGATCTTGTTCAGGTTGCGAACGACGACCT 88548 >seq1883 Length=75506 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 35632 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCC 35573 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 35572 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 35513 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| ||||| | | |||| || || ||| Sbjct 35512 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTGTCCGACTACAAC 35453 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | || | ||||| || Sbjct 35452 ATCCAGAAGGAGTCCACGCTCCACCTTGTCCTCCGTCTCCGCGGTGG 35406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || || | Sbjct 35861 GATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTC 35802 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 35801 TGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 35742 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||| || || || || ||||| |||||| | | | | || || || || Sbjct 35741 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 35682 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||| | || | || |||| || || Sbjct 35681 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGCGG 35634 >seq5 Length=272196 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 174361 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 174302 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 174301 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 174242 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | | | || || |||||| Sbjct 174241 CAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTATAAC 174182 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 174181 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 174135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883124544720